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ATI1 mesoderm induction early response protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819206, updated on 18-Sep-2024

Summary

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Official Symbol
ATI1
Official Full Name
mesoderm induction early response protein
Primary source
TAIR:AT2G45980
Locus tag
AT2G45980
See related
Araport:AT2G45980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATG8-interacting protein 1; F4I18.37; F4I18_37
Summary
Encodes an Atg8-interacting protein that is partially associated with the ER during favorable growth conditions and becomes mainly associated with a spherical compartment that dynamically moves along the ER network. In stress induced plants, ATI1 is localized to a novel plastid associated bodies that are transported to vesicles, in what appears to be an autophagy dependent process. ATI1 interacts with number of other plastid proteins such as NPQ4 and APE1.
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Genomic context

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See ATI1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (18917272..18919198, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene plasma membrane intrinsic protein 1B Neighboring gene cytochrome P450, family 86, subfamily A, polypeptide 8 Neighboring gene ribosomal RNA small subunit methyltransferase G Neighboring gene ncRNA Neighboring gene LDL receptor wingless signaling/trafficking chaperone

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ATI1 (ATG8-interacting protein 1) and ATI2 define a plant starvation-induced reticulophagy pathway and serve as MSBP1/MAPR5 cargo receptors. Wu J, et al. Autophagy, 2021 Nov. PMID 33487099, Free PMC Article
  2. The transmembrane autophagy cargo receptors ATI1 and ATI2 interact with ATG8 through intrinsically disordered regions with distinct biophysical properties. Sjøgaard IMZ, et al. Biochem J, 2019 Feb 5. PMID 30642888
  3. A new type of compartment, defined by plant-specific Atg8-interacting proteins, is induced upon exposure of Arabidopsis plants to carbon starvation. Honig A, et al. Plant Cell, 2012 Jan. PMID 22253227, Free PMC Article
  4. Arabidopsis ATG8-INTERACTING PROTEIN1 is involved in autophagy-dependent vesicular trafficking of plastid proteins to the vacuole. Michaeli S, et al. Plant Cell, 2014 Oct. PMID 25281689, Free PMC Article
  5. The N-coil and the globular N-terminal domain of plant ARGONAUTE1 are interaction hubs for regulatory factors. Bressendorff S, et al. Biochem J, 2023 Jul 12. PMID 37278687

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. ATI1 (ATG8-interacting protein 1) and ATI2 define a plant starvation-induced reticulophagy pathway and serve as MSBP1/MAPR5 cargo receptors.
    Title: ATI1 (ATG8-interacting protein 1) and ATI2 define a plant starvation-induced reticulophagy pathway and serve as MSBP1/MAPR5 cargo receptors.
  2. The transmembrane autophagy cargo receptors ATI1 and ATI2 interact with ATG8 through intrinsically disordered regions with distinct biophysical properties.
    Title: The transmembrane autophagy cargo receptors ATI1 and ATI2 interact with ATG8 through intrinsically disordered regions with distinct biophysical properties.
  3. Data indicate that ATG8-INTERACTING PROTEIN1 (ATI1; At2g45980) interacts with plastid-localized proteins and was further shown to be required for the turnover of one of them.
    Title: Arabidopsis ATG8-INTERACTING PROTEIN1 is involved in autophagy-dependent vesicular trafficking of plastid proteins to the vacuole.
  4. ATI1 and ATI2 are partially associated with the endoplasmic reticulum (ER) membrane network, whereas upon exposure to carbon starvation, they become mainly associated with newly identified spherical compartments that dynamically move along the ER network.
    Title: A new type of compartment, defined by plant-specific Atg8-interacting proteins, is induced upon exposure of Arabidopsis plants to carbon starvation.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_130161.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within plastid to vacuole vesicle-mediated transport IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within protein targeting to vacuole involved in autophagy IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast stroma IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 
located_in intracellular anatomical structure IDA
Inferred from Direct Assay
more info
 PubMed 
located_in intracellular membrane-bounded organelle IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
mesoderm induction early response protein
NP_566059.1
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G00355.2); Has 93 Blast hits to 90 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    18917272..18919198 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_130161.3 → NP_566059.1  mesoderm induction early response protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566059.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O82775, Q8LEV1, Q94K87
    UniProtKB/TrEMBL
    A0A178VWW3, A0A5S9X7E1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O82775.2

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