U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

AT hook motif DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819193, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
AT hook motif DNA-binding family protein
Primary source
TAIR:AT2G45850
Locus tag
AT2G45850
See related
Araport:AT2G45850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AHL9; AT-hook motif nuclear localized protein 9; F4I18.17
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (18871479..18873972, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene DEA(D/H)-box RNA helicase family protein Neighboring gene Remorin family protein Neighboring gene downstream target of AGL15 2 Neighboring gene O-glucosyltransferase rumi-like protein (DUF821) Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene Bestrophin-like protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Koroleva OA, et al. Plant J, 2005 Jan. PMID 15610358
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_001337155.1
NM_130148.3
NM_180111.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables minor groove of adenine-thymine-rich DNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
AT hook motif DNA-binding family protein
NP_182109.1
  • AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT3G61310.1); Has 793 Blast hits to 789 proteins in 47 species: Archae - 0; Bacteria - 4; Metazoa - 23; Fungi - 13; Plants - 747; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
NP_850442.1
  • AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT3G61310.1); Has 793 Blast hits to 789 proteins in 47 species: Archae - 0; Bacteria - 4; Metazoa - 23; Fungi - 13; Plants - 747; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    18871479..18873972 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_130148.3 → NP_182109.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_182109.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80834
    UniProtKB/TrEMBL
    A0A178VT17, A0A5S9X821, A0A654F2A4
    Conserved Domains (1) summary
    cd11378
    Location:163 → 277
    DUF296; Domain of unknown function found in archaea, bacteria, and plants

  2. NM_001337155.1 → NP_001325280.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B2P7

  3. NM_180111.2 → NP_850442.1  AT hook motif DNA-binding family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850442.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80834
    UniProtKB/TrEMBL
    A0A178VT17, A0A5S9X821, A0A654F2A4
    Conserved Domains (1) summary
    cd11378
    Location:163 → 277
    DUF296; Domain of unknown function found in archaea, bacteria, and plants
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O80834.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.