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EMB2766 structural constituent of nuclear pore [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819108, updated on 18-Sep-2024

Summary

Official Symbol
EMB2766
Official Full Name
structural constituent of nuclear pore
Primary source
TAIR:AT2G45000
Locus tag
AT2G45000
See related
Araport:AT2G45000
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtNUP62; EMBRYO DEFECTIVE 2766; nucleoporin 62; NUP62; T14P1.20
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Genomic context

See EMB2766 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Sequence:
Chromosome: 2; NC_003071.7 (18564017..18567892)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene carotenoid cleavage dioxygenase 7 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene PLAC8 family protein Neighboring gene tRNA-Arg Neighboring gene ncRNA

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_180098.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables structural constituent of nuclear pore IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
 
located_in cytosol HDA PubMed 
located_in nuclear envelope IDA
Inferred from Direct Assay
more info
PubMed 
located_in nuclear periphery IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
structural constituent of nuclear pore
NP_850429.1
  • EMBRYO DEFECTIVE 2766 (EMB2766); FUNCTIONS IN: structural constituent of nuclear pore; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, nuclear pore; CONTAINS InterPro DOMAIN/s: Nucleoporin, Nsp1-like, C-terminal (InterPro:IPR007758); Has 235342 Blast hits to 95277 proteins in 3388 species: Archae - 819; Bacteria - 58190; Metazoa - 65863; Fungi - 46438; Plants - 10106; Viruses - 2707; Other Eukaryotes - 51219 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    18564017..18567892
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180098.3NP_850429.1  structural constituent of nuclear pore [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850429.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L7F7, Q9SHD8
    UniProtKB/TrEMBL
    A0A178W0D6
    Conserved Domains (3) summary
    COG1390
    Location:543724
    NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
    pfam04871
    Location:590727
    Uso1_p115_C; Uso1 / p115 like vesicle tethering protein, C terminal region
    pfam05064
    Location:519630
    Nsp1_C; Nsp1-like C-terminal region