U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ARABIDILLO-1 ARABIDILLO-1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819099, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
ARABIDILLO-1
Official Full Name
ARABIDILLO-1
Primary source
TAIR:AT2G44900
Locus tag
AT2G44900
See related
Araport:AT2G44900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDILLO1; F-box Armadillo protein 1; T13E15.9
Summary
ARABIDILLO-1 and its homolog, ARABIDILLO -2, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-1 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-1-overexpressing lines produce more lateral roots than wild-type seedlings.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See ARABIDILLO-1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Sequence:
Chromosome: 2; NC_003071.7 (18511313..18516468, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR-like) superfamily protein Neighboring gene cytochrome P450, family 704, subfamily A, polypeptide 1 Neighboring gene ncRNA Neighboring gene homeobox-leucine zipper protein 4 Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Armadillo-related proteins promote lateral root development in Arabidopsis. Coates JC, et al. Proc Natl Acad Sci U S A, 2006 Jan 31. PMID 16434475, Free PMC Article
  2. ARABIDILLO proteins have a novel and conserved domain structure important for the regulation of their stability. Nibau C, et al. Plant Mol Biol, 2011 Jan. PMID 21052782
  3. AtMYB93 is a novel negative regulator of lateral root development in Arabidopsis. Gibbs DJ, et al. New Phytol, 2014 Sep. PMID 24902892, Free PMC Article
  4. PAH-domain-specific interactions of the Arabidopsis transcription coregulator SIN3-LIKE1 (SNL1) with telomere-binding protein 1 and ALWAYS EARLY2 Myb-DNA binding factors. Bowen AJ, et al. J Mol Biol, 2010 Feb 5. PMID 19962994
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data show that ARABIDILLO-1 (At2g44900) protein is associated with ubiquitin and is turned over by the proteasome.
    Title: ARABIDILLO proteins have a novel and conserved domain structure important for the regulation of their stability.
  2. ARABIDILLO-1 functions redundantly with Arabidillo-2 to promote lateral root development in Arabidopsis. [ARABIDILLO-1]
    Title: Armadillo-related proteins promote lateral root development in Arabidopsis.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Markers

  • At2g44900_Arabidopsis_lyrata_ssp._lyrata_CAN3 (e-PCR)
  • At2g44900_Arabidopsis_lyrata_ssp._petraea_GER10 (e-PCR)

Homology

NM_001337106.1
NM_130054.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription factor binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within lateral root development IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within lateral root development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
ARABIDILLO-1
NP_566029.1
  • ARABIDILLO-1 (ARABIDILLO-1); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: lateral root development; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARABIDILLO-2 (TAIR:AT3G60350.1); Has 10074 Blast hits to 5287 proteins in 284 species: Archae - 0; Bacteria - 24; Metazoa - 4121; Fungi - 736; Plants - 4117; Viruses - 0; Other Eukaryotes - 1076 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    18511313..18516468 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_130054.3 → NP_566029.1  ARABIDILLO-1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566029.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22161
    UniProtKB/TrEMBL
    A0A178VSY4, A0A5S9X728, A0A654F1Z7
    Conserved Domains (6) summary
    cd09293
    Location:143 → 225
    AMN1; Antagonist of mitotic exit network protein 1
    PLN03200
    Location:608 → 784
    PLN03200; cellulose synthase-interactive protein; Provisional
    sd00034
    Location:134 → 159
    LRR_AMN1; leucine-rich repeat [structural motif]
    sd00043
    Location:612 → 637
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:599 → 638
    Arm; Armadillo/beta-catenin-like repeat
    pfam12937
    Location:47 → 91
    F-box-like

  2. NM_001337106.1 → NP_001325003.1  ARABIDILLO-1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22161
    UniProtKB/TrEMBL
    A0A178VSY4, A0A5S9X728, A0A654F1Z7
    Conserved Domains (6) summary
    cd09293
    Location:143 → 225
    AMN1; Antagonist of mitotic exit network protein 1
    PLN03200
    Location:608 → 784
    PLN03200; cellulose synthase-interactive protein; Provisional
    sd00034
    Location:134 → 159
    LRR_AMN1; leucine-rich repeat [structural motif]
    sd00043
    Location:612 → 637
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:599 → 638
    Arm; Armadillo/beta-catenin-like repeat
    pfam12937
    Location:47 → 91
    F-box-like
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O22161.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools