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GH9B9 glycosyl hydrolase 9B9 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819062, updated on 18-Sep-2024

Summary

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Official Symbol
GH9B9
Official Full Name
glycosyl hydrolase 9B9
Primary source
TAIR:AT2G44540
Locus tag
AT2G44540
See related
Araport:AT2G44540
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtGH9B9; F4I1.52; F4I1_52; glycosyl hydrolase 9B9
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Genomic context

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See GH9B9 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (18386219..18388110, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene NADH dehydrogenase ubiquinone 1 alpha subcomplex assembly factor-like protein (DUF498/DUF598) Neighboring gene Phosphoribosyltransferase family protein Neighboring gene glycosyl hydrolase 9B10 Neighboring gene glycosyl hydrolase 9B11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_130018.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cellulase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
glycosyl hydrolase 9B9
NP_181982.1
  • glycosyl hydrolase 9B9 (GH9B9); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9B10 (TAIR:AT2G44550.1); Has 1834 Blast hits to 1822 proteins in 268 species: Archae - 2; Bacteria - 675; Metazoa - 180; Fungi - 19; Plants - 916; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    18386219..18388110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_130018.2 → NP_181982.1  glycosyl hydrolase 9B9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181982.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O64889
    UniProtKB/TrEMBL
    A0A178VWQ8, A0A654F362
    Conserved Domains (1) summary
    PLN00119
    Location:4 → 491
    PLN00119; endoglucanase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O64889.1

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