U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

GDI1 guanosine nucleotide diphosphate dissociation inhibitor 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819016, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
GDI1
Official Full Name
guanosine nucleotide diphosphate dissociation inhibitor 1
Primary source
TAIR:AT2G44100
Locus tag
AT2G44100
See related
Araport:AT2G44100
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AT-GDI1; ATGDI1; F6E13.23; F6E13.26; F6E13_26; guanosine nucleotide diphosphate dissociation inhibitor 1
Summary
GDP dissociation inhibitor involved in vesicular membrane traffic
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See GDI1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Sequence:
Chromosome: 2; NC_003071.7 (18241469..18245008)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ARGOS-like protein Neighboring gene Ankyrin repeat family protein Neighboring gene ncRNA Neighboring gene Seven transmembrane MLO family protein Neighboring gene Ribosomal protein L30/L7 family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. An Arabidopsis gene isolated by a novel method for detecting genetic interaction in yeast encodes the GDP dissociation inhibitor of Ara4 GTPase. Ueda T, et al. Plant Cell, 1996 Nov. PMID 8953772, Free PMC Article
  2. At-GDI1 from Arabidopsis thaliana encodes a rab-specific GDP dissociation inhibitor that complements the sec19 mutation of Saccharomyces cerevisiae. Zárský V, et al. FEBS Lett, 1997 Feb 24. PMID 9091322
  3. Modes of interaction between the Arabidopsis Rab protein, Ara4, and its putative regulator molecules revealed by a yeast expression system. Ueda T, et al. Plant J, 2000 Feb. PMID 10758485
  4. CPK3-phosphorylated RhoGDI1 is essential in the development of Arabidopsis seedlings and leaf epidermal cells. Wu Y, et al. J Exp Bot, 2013 Aug. PMID 23846874, Free PMC Article
  5. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_001084585.2
NM_129973.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables Rab GDP-dissociation inhibitor activity IEA
Inferred from Electronic Annotation
more info
  
enables Rab GDP-dissociation inhibitor activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within plasma membrane to endosome transport IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in small GTPase-mediated signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in cytosol HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
guanosine nucleotide diphosphate dissociation inhibitor 1
NP_001078054.1
  • guanosine nucleotide diphosphate dissociation inhibitor 1 (GDI1); CONTAINS InterPro DOMAIN/s: Rab GTPase activator (InterPro:IPR002005), GDP dissociation inhibitor (InterPro:IPR018203), Rab GDI protein (InterPro:IPR000806); BEST Arabidopsis thaliana protein match is: RAB GDP dissociation inhibitor 2 (TAIR:AT3G59920.1); Has 1320 Blast hits to 1214 proteins in 252 species: Archae - 2; Bacteria - 0; Metazoa - 653; Fungi - 281; Plants - 182; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).
NP_181938.1
  • guanosine nucleotide diphosphate dissociation inhibitor 1 (GDI1); CONTAINS InterPro DOMAIN/s: Rab GTPase activator (InterPro:IPR002005), GDP dissociation inhibitor (InterPro:IPR018203), Rab GDI protein (InterPro:IPR000806); BEST Arabidopsis thaliana protein match is: RAB GDP dissociation inhibitor 2 (TAIR:AT3G59920.1); Has 1316 Blast hits to 1209 proteins in 256 species: Archae - 2; Bacteria - 0; Metazoa - 652; Fungi - 289; Plants - 183; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    18241469..18245008
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129973.3 → NP_181938.1  guanosine nucleotide diphosphate dissociation inhibitor 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181938.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DFX1, Q8LBY8, Q8VZB4, Q96254, Q96284
    UniProtKB/TrEMBL
    A0A178VSJ6, A0A5S9X753, A0A7G2EDK6
    Conserved Domains (1) summary
    cl21454
    Location:1 → 433
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

  2. NM_001084585.2 → NP_001078054.1  guanosine nucleotide diphosphate dissociation inhibitor 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078054.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2EDK6
    Conserved Domains (1) summary
    cl21454
    Location:1 → 430
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q96254.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools