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SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819001, updated on 18-Sep-2024

Summary

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Official Full Name
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
Primary source
TAIR:AT2G43960
Locus tag
AT2G43960
See related
Araport:AT2G43960
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6E13.9
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (18203312..18204912, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene chloroplast outer envelope protein 37 Neighboring gene RNA-binding protein Neighboring gene inositol 1,3,4-trisphosphate 5/6-kinase 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_129958.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SWAP (Suppressor-of-White-APricot)/surp domain-containing protein
NP_181924.2
  • SWAP (Suppressor-of-White-APricot)/surp domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061); BEST Arabidopsis thaliana protein match is: SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (TAIR:AT5G06520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    18203312..18204912 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129958.2 → NP_181924.2  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181924.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VVU9, Q58FX2, Q84RE6
    Conserved Domains (2) summary
    smart00648
    Location:126 → 179
    SWAP; Suppressor-of-White-APricot splicing regulator
    pfam01805
    Location:288 → 342
    Surp; Surp module
Nucleotide Protein
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