U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Pectin lyase-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818993, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Pectin lyase-like superfamily protein
Primary source
TAIR:AT2G43890
Locus tag
AT2G43890
See related
Araport:AT2G43890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6E13.2
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (18176831..18179178)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene Endonuclease/exonuclease/phosphatase family protein Neighboring gene HARMLESS TO OZONE LAYER 1 Neighboring gene miscRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Pectin lyase-like superfamily protein
NP_181917.1
  • Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G05650.1); Has 3985 Blast hits to 3965 proteins in 478 species: Archae - 4; Bacteria - 1086; Metazoa - 14; Fungi - 1267; Plants - 1489; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    18176831..18179178
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129951.2 → NP_181917.1  Pectin lyase-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181917.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VQI1, A0A654F1N3, O80559
    Conserved Domains (1) summary
    cl19188
    Location:12 → 392
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools