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Chitinase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818960, updated on 18-Sep-2024

Summary

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Official Full Name
Chitinase family protein
Primary source
TAIR:AT2G43580
Locus tag
AT2G43580
See related
Araport:AT2G43580
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F18O19.31
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (18078649..18080094, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene FKBP-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene chitinase Neighboring gene Chitinase family protein Neighboring gene Chitinase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis WRKY33 transcription factor is required for resistance to necrotrophic fungal pathogens. Zheng Z, et al. Plant J, 2006 Nov. PMID 17059405
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_129920.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cell wall macromolecule catabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in response to fungus IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Chitinase family protein
NP_181886.1
  • Chitinase family protein; FUNCTIONS IN: chitin binding, chitinase activity; INVOLVED IN: carbohydrate metabolic process, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2596 Blast hits to 2382 proteins in 484 species: Archae - 0; Bacteria - 530; Metazoa - 33; Fungi - 193; Plants - 1749; Viruses - 5; Other Eukaryotes - 86 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    18078649..18080094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129920.3 → NP_181886.1  Chitinase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181886.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O24598
    UniProtKB/TrEMBL
    A0A178VTN4, A0A7G2EH55
    Conserved Domains (2) summary
    cd00325
    Location:73 → 265
    chitinase_GH19; Glycoside hydrolase family 19, chitinase domain
    pfam00187
    Location:29 → 54
    Chitin_bind_1; Chitin recognition protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O24598.1

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