U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

scorpion toxin-like knottin superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818957, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
scorpion toxin-like knottin superfamily protein
Primary source
TAIR:AT2G43550
Locus tag
AT2G43550
See related
Araport:AT2G43550
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T1O24.29
Summary
Encodes a defensin-like (DEFL) family protein.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (18073305..18073651)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Scorpion toxin-like knottin superfamily protein Neighboring gene uncharacterized protein Neighboring gene FKBP-like peptidyl-prolyl cis-trans isomerase family protein Neighboring gene chitinase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_129917.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables sodium channel inhibitor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
scorpion toxin-like knottin superfamily protein
NP_566002.2
  • Scorpion toxin-like knottin superfamily protein; FUNCTIONS IN: ion channel inhibitor activity; INVOLVED IN: defense response; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Scorpion long chain toxin (InterPro:IPR002061), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: Scorpion toxin-like knottin superfamily protein (TAIR:AT2G43535.1); Has 147 Blast hits to 147 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    18073305..18073651
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129917.3 → NP_566002.2  scorpion toxin-like knottin superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IR70, O22869, Q6ZZS7, Q6ZZU1, Q8GWN0
    UniProtKB/TrEMBL
    A0A5S9X6Q4, A0A654FC62
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O22869.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools