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Pentatricopeptide repeat (PPR-like) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818893, updated on 18-Sep-2024

Summary

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Official Full Name
Pentatricopeptide repeat (PPR-like) superfamily protein
Primary source
TAIR:AT2G42920
Locus tag
AT2G42920
See related
Araport:AT2G42920
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F23E6.4
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (17858655..17863466)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene MEI2-like 2 Neighboring gene Plant basic secretory protein (BSP) family protein Neighboring gene Phosphoribosyltransferase family protein Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene Putative AT-hook DNA-binding family protein Neighboring gene Magnesium transporter CorA-like family protein Neighboring gene F-box/LRR protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

NM_129853.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA modification IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR-like) superfamily protein
NP_181820.1
  • Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G48910.1); Has 37919 Blast hits to 14277 proteins in 266 species: Archae - 0; Bacteria - 16; Metazoa - 156; Fungi - 107; Plants - 36994; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    17858655..17863466
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001337000.1 → NP_001325245.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SJG6
    UniProtKB/TrEMBL
    A0A178VRW9, A0A5S9X6H8, A0A7G2EDD0
    Conserved Domains (2) summary
    PLN03077
    Location:42 → 528
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:225 → 252
    PPR; PPR repeat [structural motif]

  2. NM_129853.6 → NP_181820.1  Pentatricopeptide repeat (PPR-like) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181820.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SJG6
    UniProtKB/TrEMBL
    A0A178VRW9, A0A5S9X6H8, A0A7G2EDD0
    Conserved Domains (2) summary
    PLN03077
    Location:42 → 528
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:225 → 252
    PPR; PPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SJG6.1

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