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transcription elongation factor B polypeptide [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818878, updated on 18-Sep-2024

Summary

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Official Full Name
transcription elongation factor B polypeptide
Primary source
TAIR:AT2G42780
Locus tag
AT2G42780
See related
Araport:AT2G42780
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7D19.22; F7D19_22
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Genomic context

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Location:
chromosome: 2
Exon count:
9
Sequence:
Chromosome: 2; NC_003071.7 (17800312..17802816)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene DUF1685 family protein Neighboring gene Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein Neighboring gene citrate synthase 3 Neighboring gene ncRNA Neighboring gene receptor like protein 29

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001202807.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of elongin complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transcription elongation factor B polypeptide
NP_001189736.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684).
NP_565984.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    17800312..17802816
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129839.4 → NP_565984.1  transcription elongation factor B polypeptide [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565984.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VSN4, A0A5S9X6Z6, Q93V71, Q9SJH8
    Conserved Domains (1) summary
    pfam06881
    Location:28 → 139
    Elongin_A; RNA polymerase II transcription factor SIII (Elongin) subunit A

  2. NM_001202807.1 → NP_001189736.1  transcription elongation factor B polypeptide [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189736.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9X6Z6, F4IP79
    Conserved Domains (1) summary
    pfam06881
    Location:28 → 139
    Elongin_A; RNA polymerase II transcription factor SIII (Elongin) subunit A
Nucleotide Protein
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