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GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818834, updated on 18-Sep-2024

Summary

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Official Full Name
GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein
Primary source
TAIR:AT2G42330
Locus tag
AT2G42330
See related
Araport:AT2G42330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MHK10.5; MHK10_5
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (17630729..17634370, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) protein Neighboring gene ncRNA Neighboring gene nucleolar protein gar2-like protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene RING/U-box superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001084572.3
NM_001336968.1
NM_129795.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in spliceosomal complex disassembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein
NP_001078041.1
  • GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain; FUNCTIONS IN: nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tuftelin interacting protein N-terminal (InterPro:IPR022159), D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (TAIR:AT1G17070.1); Has 1086 Blast hits to 1065 proteins in 234 species: Archae - 0; Bacteria - 5; Metazoa - 675; Fungi - 134; Plants - 155; Viruses - 1; Other Eukaryotes - 116 (source: NCBI BLink).
NP_181762.1
  • GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain; FUNCTIONS IN: nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tuftelin interacting protein N-terminal (InterPro:IPR022159), D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (TAIR:AT1G17070.1); Has 1086 Blast hits to 1065 proteins in 234 species: Archae - 0; Bacteria - 5; Metazoa - 675; Fungi - 134; Plants - 155; Viruses - 1; Other Eukaryotes - 116 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    17630729..17634370 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129795.4 → NP_181762.1  GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181762.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SLC6
    UniProtKB/TrEMBL
    A0A178VSI9, A0A7G2EFL9
    Conserved Domains (3) summary
    pfam01585
    Location:103 → 146
    G-patch; G-patch domain
    pfam07842
    Location:323 → 587
    GCFC; GC-rich sequence DNA-binding factor-like protein
    pfam12457
    Location:5 → 52
    TIP_N; Tuftelin interacting protein N terminal

  2. NM_001084572.3 → NP_001078041.1  GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078041.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SLC6
    UniProtKB/TrEMBL
    A0A178VSI9, A0A7G2EFL9
    Conserved Domains (3) summary
    pfam01585
    Location:103 → 146
    G-patch; G-patch domain
    pfam07842
    Location:323 → 587
    GCFC; GC-rich sequence DNA-binding factor-like protein
    pfam12457
    Location:5 → 52
    TIP_N; Tuftelin interacting protein N terminal

  3. NM_001336968.1 → NP_001325005.1  GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SLC6
    UniProtKB/TrEMBL
    A0A178VSI9, A0A7G2EFL9
    Conserved Domains (3) summary
    pfam01585
    Location:103 → 146
    G-patch; G-patch domain
    pfam07842
    Location:323 → 587
    GCFC; GC-rich sequence DNA-binding factor-like protein
    pfam12457
    Location:5 → 52
    TIP_N; Tuftelin interacting protein N terminal
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SLC6.1

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