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PLDBETA1 phospholipase D beta 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818802, updated on 18-Sep-2024

Summary

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Official Symbol
PLDBETA1
Official Full Name
phospholipase D beta 1
Primary source
TAIR:AT2G42010
Locus tag
AT2G42010
See related
Araport:AT2G42010
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
PHOSPHOLIPASE D; phospholipase D beta 1; PLDBETA; T6D20.10; T6D20_10
Summary
phospholipase D (PLDbeta)
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Genomic context

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See PLDBETA1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Sequence:
Chromosome: 2; NC_003071.7 (17532813..17538628, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene plant EC metallothionein family protein Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene tRNA-Ser Neighboring gene RING/U-box superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis phospholipase Dβ1 modulates defense responses to bacterial and fungal pathogens. Zhao J, et al. New Phytol, 2013 Jul. PMID 23577648, Free PMC Article
  2. Evidence for and characterization of Ca2+ binding to the catalytic region of Arabidopsis thaliana phospholipase Dbeta. Pappan K, et al. J Biol Chem, 2004 Nov 12. PMID 15356005
  3. Differential expression of genes encoding Arabidopsis phospholipases after challenge with virulent or avirulent Pseudomonas isolates. de Torres Zabela M, et al. Mol Plant Microbe Interact, 2002 Aug. PMID 12182338
  4. Molecular cloning and functional analysis of polyphosphoinositide-dependent phospholipase D, PLDbeta, from Arabidopsis. Pappan K, et al. J Biol Chem, 1997 Mar 14. PMID 9054397
  5. Molecular heterogeneity of phospholipase D (PLD). Cloning of PLDgamma and regulation of plant PLDgamma, -beta, and -alpha by polyphosphoinositides and calcium. Qin W, et al. J Biol Chem, 1997 Nov 7. PMID 9353280

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Phospholipase Dbeta1 modulates defense responses to bacterial and fungal pathogens in Arabidopsis
    Title: Arabidopsis phospholipase Dβ1 modulates defense responses to bacterial and fungal pathogens.
  2. Results demonstrate the effects of calcium- and lipid-binding properties of the C2 and catalytic domains of plant phospholipase D (PLD) and provide insight into the mechanism by which calcium regulates PLD activity.
    Title: Evidence for and characterization of Ca2+ binding to the catalytic region of Arabidopsis thaliana phospholipase Dbeta.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001336948.1
NM_129765.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables N-acylphosphatidylethanolamine-specific phospholipase D activity IEA
Inferred from Electronic Annotation
more info
  
enables phosphatidylinositol-4,5-bisphosphate binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables phospholipase D activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables phospholipase D activity IEA
Inferred from Electronic Annotation
more info
  
enables phospholipase D activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables phospholipase D activity TAS
Traceable Author Statement
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to bacterium IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

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Preferred Names
phospholipase D beta 1
NP_565963.2
  • phospholipase D beta 1 (PLDBETA1); FUNCTIONS IN: phospholipase D activity, protein binding, phosphatidylinositol-4,5-bisphosphate binding; INVOLVED IN: response to cadmium ion, defense response to bacterium, incompatible interaction; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Phospholipase D (InterPro:IPR015679), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase D beta 2 (TAIR:AT4G00240.1); Has 42228 Blast hits to 24253 proteins in 1246 species: Archae - 34; Bacteria - 3967; Metazoa - 15807; Fungi - 8808; Plants - 7882; Viruses - 972; Other Eukaryotes - 4758 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    17532813..17538628 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129765.4 → NP_565963.2  phospholipase D beta 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565963.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4ILZ0, P93733, P93745
    UniProtKB/TrEMBL
    A0A178VSC5
    Conserved Domains (6) summary
    cd04015
    Location:267 → 416
    C2_plant_PLD; C2 domain present in plant phospholipase D (PLD)
    PLN03008
    Location:263 → 1082
    PLN03008; Phospholipase D delta
    pfam12357
    Location:1006 → 1074
    PLD_C; Phospholipase D C terminal
    pfam15991
    Location:66 → 233
    G_path_suppress; G-protein pathway suppressor
    cl15239
    Location:768 → 979
    PLDc_SF; Catalytic domain of phospholipase D superfamily proteins
    cl23807
    Location:66 → 138
    WWbp; WW-domain ligand protein

  2. NM_001336948.1 → NP_001324696.1  phospholipase D beta 1 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VSC5, A0A1P8B0W4
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P93733.4

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