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RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818674, updated on 18-Sep-2024

Summary

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Official Full Name
RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein
Primary source
TAIR:AT2G40770
Locus tag
AT2G40770
See related
Araport:AT2G40770
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T7D17.5; T7D17_5
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Genomic context

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Location:
chromosome: 2
Exon count:
20
Sequence:
Chromosome: 2; NC_003071.7 (17013269..17021606, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Rhodanese/Cell cycle control phosphatase superfamily protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Nucleic acid-binding, OB-fold-like protein Neighboring gene C-terminal cysteine residue is changed to a serine 2 Neighboring gene import inner membrane translocase subunit Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001336862.1
NM_001336863.1
NM_129640.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein
NP_001318395.1
  • zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1); Has 20880 Blast hits to 12947 proteins in 1504 species: Archae - 88; Bacteria - 5732; Metazoa - 4955; Fungi - 5171; Plants - 2134; Viruses - 115; Other Eukaryotes - 2685 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    17013269..17021606 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336862.1 → NP_001318395.1  RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F219, F4II36

  2. NM_001336863.1 → NP_001325178.1  RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F219, F4II36

  3. NM_129640.6 → NP_181609.4  RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181609.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F219, F4II36
    Conserved Domains (5) summary
    COG0553
    Location:1443 → 1614
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd00162
    Location:1344 → 1395
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    cd15517
    Location:414 → 486
    PHD_TCF19_like; PHD finger found in Transcription factor 19 (TCF-19), Lysine-specific demethylase KDM5A and KDM5B, and other similar proteins
    pfam00176
    Location:500 → 783
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:1434 → 1557
    Helicase_C; Helicase conserved C-terminal domain
Nucleotide Protein
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