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Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818667, updated on 18-Sep-2024

Summary

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Official Full Name
Tetratricopeptide repeat (TPR)-like superfamily protein
Primary source
TAIR:AT2G40720
Locus tag
AT2G40720
See related
Araport:AT2G40720
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T7D17.10; T7D17_10
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (16987269..16989851)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene kinase family with ARM repeat domain-containing protein Neighboring gene WRKY DNA-binding protein 55 Neighboring gene WRKY DNA-binding protein 54

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_129634.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA modification IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tetratricopeptide repeat (TPR)-like superfamily protein
NP_181604.1
  • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 52244 Blast hits to 13768 proteins in 266 species: Archae - 0; Bacteria - 9; Metazoa - 106; Fungi - 105; Plants - 51420; Viruses - 0; Other Eukaryotes - 604 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16987269..16989851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129634.2 → NP_181604.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181604.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q7XJN6
    UniProtKB/TrEMBL
    A0A178VV01
    Conserved Domains (3) summary
    PLN03077
    Location:187 → 853
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:645 → 672
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:131 → 180
    PPR_2; PPR repeat family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7XJN6.1

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