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RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818659, updated on 18-Sep-2024

Summary

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Official Full Name
RING/U-box superfamily protein
Primary source
TAIR:AT2G40640
Locus tag
AT2G40640
See related
Araport:AT2G40640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T7D17.18; T7D17_18
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_003071.7 (16960964..16963215, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene expansin A8 Neighboring gene Basic-leucine zipper (bZIP) transcription factor family protein Neighboring gene Uncharacterized conserved protein (UCP030365) Neighboring gene PRP38 family protein Neighboring gene Nucleic acid-binding, OB-fold-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001336850.1
NM_001336851.1
NM_001336852.1
NM_001336853.1
NM_001336854.1
NM_001336855.1
NM_001336856.1
NM_180001.4
NM_180002.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/U-box superfamily protein
NP_001318393.1
  • RING/U-box superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G05230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_850332.1
  • RING/U-box superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G05230.1); Has 69 Blast hits to 69 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
NP_850333.1
  • RING/U-box superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G05230.1); Has 69 Blast hits to 69 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16960964..16963215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180001.4 → NP_850332.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850332.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22871, Q0WUK1, Q58FY4, Q67XS7, Q680U6, Q680Z3, Q8GUT1
    UniProtKB/TrEMBL
    A0A178VLV6, A0A5S9X5S3
    Conserved Domains (1) summary
    cl17238
    Location:209 → 247
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

  2. NM_180002.3 → NP_850333.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850333.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VPZ8
    Conserved Domains (2) summary
    cd00162
    Location:208 → 244
    RING_Ubox; variant of RING finger, similar to SP-RING [structural motif]
    cl17238
    Location:206 → 245
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  3. NM_001336854.1 → NP_001323784.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VPZ8, A0A1P8AY41

  4. NM_001336856.1 → NP_001323780.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VPZ8, A0A1P8AY69
    Conserved Domains (2) summary
    cd00162
    Location:208 → 244
    RING_Ubox; variant of RING finger, similar to SP-RING [structural motif]
    cl17238
    Location:206 → 245
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  5. NM_001336855.1 → NP_001323781.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VPZ8, A0A1P8AY69
    Conserved Domains (2) summary
    cd00162
    Location:208 → 244
    RING_Ubox; variant of RING finger, similar to SP-RING [structural motif]
    cl17238
    Location:206 → 245
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  6. NM_001336852.1 → NP_001323782.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VPZ8, A0A1P8AY69
    Conserved Domains (2) summary
    cd00162
    Location:208 → 244
    RING_Ubox; variant of RING finger, similar to SP-RING [structural motif]
    cl17238
    Location:206 → 245
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  7. NM_001336851.1 → NP_001323783.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VPZ8, A0A1P8AY69
    Conserved Domains (2) summary
    cd00162
    Location:208 → 244
    RING_Ubox; variant of RING finger, similar to SP-RING [structural motif]
    cl17238
    Location:206 → 245
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

  8. NM_001336850.1 → NP_001318393.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A2H1ZE42

  9. NM_001336853.1 → NP_001323785.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AY93
    Conserved Domains (2) summary
    cd00162
    Location:208 → 244
    RING_Ubox; variant of RING finger, similar to SP-RING [structural motif]
    cl17238
    Location:206 → 245
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q58FY4.1

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