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DUF399 family protein, putative (DUF399 and DUF3411) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818633, updated on 18-Sep-2024

Summary

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Official Full Name
DUF399 family protein, putative (DUF399 and DUF3411)
Primary source
TAIR:AT2G40400
Locus tag
AT2G40400
See related
Araport:AT2G40400
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
BPG3; Brz-insensitive-pale green 3; T3G21.17; T3G21_17
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Genomic context

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Location:
chromosome: 2
Exon count:
8
Sequence:
Chromosome: 2; NC_003071.7 (16869189..16873338)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene prenylated RAB acceptor 1.B2 Neighboring gene neuronal PAS domain protein Neighboring gene Ca(2+)-dependent nuclease family protein Neighboring gene Transmembrane amino acid transporter family protein Neighboring gene Nop53 protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BPG3 is a novel chloroplast protein that involves the greening of leaves and related to brassinosteroid signaling. Yoshizawa E, et al. Biosci Biotechnol Biochem, 2014. PMID 25036828
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. These results suggest that BPG3 played an important role in regulating photosynthesis in the chloroplast under BR signaling. [BPG3]
    Title: BPG3 is a novel chloroplast protein that involves the greening of leaves and related to brassinosteroid signaling.
Submit: New GeneRIF Correction

General gene information

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NM_001336836.1
NM_129600.4
NM_179998.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within chlorophyll biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to brassinosteroid IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DUF399 family protein, putative (DUF399 and DUF3411)
NP_565930.1
  • Protein of unknown function (DUF399 and DUF3411); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF399 (InterPro:IPR007314), Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF399 and DUF3411) (TAIR:AT3G56140.1); Has 496 Blast hits to 496 proteins in 118 species: Archae - 0; Bacteria - 198; Metazoa - 0; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
NP_850329.1
  • Protein of unknown function (DUF399 and DUF3411); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF399 (InterPro:IPR007314), Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF399 and DUF3411) (TAIR:AT3G56140.1); Has 496 Blast hits to 496 proteins in 118 species: Archae - 0; Bacteria - 198; Metazoa - 0; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16869189..16873338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129600.4 → NP_565930.1  DUF399 family protein, putative (DUF399 and DUF3411) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565930.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WVB8, Q9SIY5
    UniProtKB/TrEMBL
    A0A178VSN0
    Conserved Domains (2) summary
    pfam04187
    Location:139 → 364
    Cofac_haem_bdg; Haem-binding uptake, Tiki superfamily, ChaN
    pfam11891
    Location:470 → 654
    DUF3411; Domain of unknown function (DUF3411)

  2. NM_179998.2 → NP_850329.1  DUF399 family protein, putative (DUF399 and DUF3411) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850329.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WVB8, Q9SIY5
    UniProtKB/TrEMBL
    A0A178VSN0
    Conserved Domains (2) summary
    pfam04187
    Location:139 → 364
    Cofac_haem_bdg; Haem-binding uptake, Tiki superfamily, ChaN
    pfam11891
    Location:470 → 654
    DUF3411; Domain of unknown function (DUF3411)

  3. NM_001336836.1 → NP_001325356.1  DUF399 family protein, putative (DUF399 and DUF3411) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VSN0, A0A1P8B2W9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SIY5.1

Gene LinkOut

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