U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CZF1 zinc finger (CCCH-type) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818605, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
CZF1
Official Full Name
zinc finger (CCCH-type) family protein
Primary source
TAIR:AT2G40140
Locus tag
AT2G40140
See related
Araport:AT2G40140
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
(SALT-INDUCIBLE ZINC FINGER 2; ATSZF2; SZF2; T7M7.3; T7M7_3; ZFAR1
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CZF1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (16771997..16774734)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein Neighboring gene TRICHOME BIREFRINGENCE-LIKE 28 Neighboring gene uncharacterized protein Neighboring gene trichome birefringence-like protein (DUF828)

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The CCCH-type zinc finger proteins AtSZF1 and AtSZF2 regulate salt stress responses in Arabidopsis. Sun J, et al. Plant Cell Physiol, 2007 Aug. PMID 17609218
  2. Expression profiling and mutant analysis reveals complex regulatory networks involved in Arabidopsis response to Botrytis infection. AbuQamar S, et al. Plant J, 2006 Oct. PMID 16925600
  3. The cold-induced early activation of phospholipase C and D pathways determines the response of two distinct clusters of genes in Arabidopsis cell suspensions. Vergnolle C, et al. Plant Physiol, 2005 Nov. PMID 16258011, Free PMC Article
  4. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
  5. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_001036440.2
NM_129572.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
acts_upstream_of_or_within defense response to fungus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within response to cold IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to salt stress IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
zinc finger (CCCH-type) family protein
NP_001031517.1
  • CZF1; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: salt-inducible zinc finger 1 (TAIR:AT3G55980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_181543.1
  • CZF1; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: salt-inducible zinc finger 1 (TAIR:AT3G55980.1); Has 1196 Blast hits to 1143 proteins in 183 species: Archae - 4; Bacteria - 47; Metazoa - 401; Fungi - 61; Plants - 441; Viruses - 2; Other Eukaryotes - 240 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16771997..16774734
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129572.5 → NP_181543.1  zinc finger (CCCH-type) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181543.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9XEE6
    UniProtKB/TrEMBL
    A0A178VP72, A0A5S9X663, A0A654F1U6
    Conserved Domains (3) summary
    smart00356
    Location:258 → 279
    ZnF_C3H1; zinc finger
    sd00045
    Location:76 → 109
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:76 → 145
    Ank_2; Ankyrin repeats (3 copies)

  2. NM_001036440.2 → NP_001031517.1  zinc finger (CCCH-type) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031517.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9XEE6
    UniProtKB/TrEMBL
    A0A178VP72, A0A5S9X663, A0A654F1U6
    Conserved Domains (3) summary
    smart00356
    Location:258 → 279
    ZnF_C3H1; zinc finger
    sd00045
    Location:76 → 109
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:76 → 145
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9XEE6.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools