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Cysteine/Histidine-rich C1 domain family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818593, updated on 18-Sep-2024

Summary

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Official Full Name
Cysteine/Histidine-rich C1 domain family protein
Primary source
TAIR:AT2G40050
Locus tag
AT2G40050
See related
Araport:AT2G40050
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T28M21.21; T28M21_21
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (16723881..16725803, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Nucleolar histone methyltransferase-related protein Neighboring gene nuclear RNA polymerase D1B Neighboring gene Clathrin light chain protein Neighboring gene flocculation FLO11-like protein Neighboring gene EARLY FLOWERING-like protein (DUF1313)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NM_001202789.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Cysteine/Histidine-rich C1 domain family protein
NP_001189718.1
  • Cysteine/Histidine-rich C1 domain family protein; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G61840.1).
NP_181534.1
  • Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G61840.1); Has 1548 Blast hits to 649 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 1527; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16723881..16725803 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129563.3 → NP_181534.1  Cysteine/Histidine-rich C1 domain family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181534.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VNF0, O04208
    Conserved Domains (2) summary
    pfam03107
    Location:265 → 296
    C1_2; C1 domain
    pfam07649
    Location:352 → 381
    C1_3; C1-like domain

  2. NM_001202789.1 → NP_001189718.1  Cysteine/Histidine-rich C1 domain family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189718.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9X5N6, A0A654F5R5, F4IG40
    Conserved Domains (2) summary
    pfam03107
    Location:265 → 296
    C1_2; C1 domain
    pfam07649
    Location:210 → 239
    C1_3; C1-like domain
Nucleotide Protein
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