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Nucleolar histone methyltransferase-related protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818590, updated on 18-Sep-2024

Summary

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Official Full Name
Nucleolar histone methyltransferase-related protein
Primary source
TAIR:AT2G40020
Locus tag
AT2G40020
See related
Araport:AT2G40020
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T28M21.18; T28M21_18
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (16710929..16713339)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Ribosomal protein L10 family protein Neighboring gene nuclear RNA polymerase D1B Neighboring gene Cysteine/Histidine-rich C1 domain family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001084558.3
NM_001336817.1
NM_129560.4
NM_201914.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Nucleolar histone methyltransferase-related protein
NP_001078027.1
  • Nucleolar histone methyltransferase-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WIYLD domain (InterPro:IPR018848); BEST Arabidopsis thaliana protein match is: Nucleolar histone methyltransferase-related protein (TAIR:AT1G45248.4); Has 5162 Blast hits to 3107 proteins in 297 species: Archae - 25; Bacteria - 262; Metazoa - 1913; Fungi - 476; Plants - 190; Viruses - 172; Other Eukaryotes - 2124 (source: NCBI BLink).
NP_565920.2
  • Nucleolar histone methyltransferase-related protein; CONTAINS InterPro DOMAIN/s: WIYLD domain (InterPro:IPR018848); BEST Arabidopsis thaliana protein match is: Nucleolar histone methyltransferase-related protein (TAIR:AT1G45248.4); Has 5171 Blast hits to 3094 proteins in 302 species: Archae - 25; Bacteria - 259; Metazoa - 1900; Fungi - 494; Plants - 187; Viruses - 172; Other Eukaryotes - 2134 (source: NCBI BLink).
NP_973643.1
  • Nucleolar histone methyltransferase-related protein; CONTAINS InterPro DOMAIN/s: WIYLD domain (InterPro:IPR018848); BEST Arabidopsis thaliana protein match is: Nucleolar histone methyltransferase-related protein (TAIR:AT1G45248.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16710929..16713339
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_201914.3 → NP_973643.1  Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973643.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IG36
    Conserved Domains (1) summary
    pfam10440
    Location:12 → 68
    WIYLD; Ubiquitin-binding WIYLD domain

  2. NM_001084558.3 → NP_001078027.1  Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078027.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W017, A0A654F1R5, A8MQW8
    Conserved Domains (1) summary
    pfam10440
    Location:11 → 68
    WIYLD; Ubiquitin-binding WIYLD domain

  3. NM_129560.4 → NP_565920.2  Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565920.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W017, Q8GW87
    Conserved Domains (1) summary
    pfam10440
    Location:1 → 56
    WIYLD; Ubiquitin-binding WIYLD domain

  4. NM_001336817.1 → NP_001325004.1  Nucleolar histone methyltransferase-related protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W017, A0A1P8B1X0
Nucleotide Protein
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