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RHC2A RING-H2 finger C2A [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818556, updated on 18-Sep-2024

Summary

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Official Symbol
RHC2A
Official Full Name
RING-H2 finger C2A
Primary source
TAIR:AT2G39720
Locus tag
AT2G39720
See related
Araport:AT2G39720
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
RING-H2 finger C2A; RING-H2 FINGER PROTEIN RHC2A; T5I7.2; T5I7_2
Summary
Encodes a putative RING-H2 finger protein RHC2a.
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Genomic context

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See RHC2A in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (16566586..16568960, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ROTUNDIFOLIA like 8 Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene LYR family of Fe/S cluster biogenesis protein Neighboring gene rubisco activase Neighboring gene Nucleotidyltransferase family protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001336792.1
NM_129529.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING-H2 finger C2A
NP_001318385.1
  • RING-H2 finger C2A (RHC2A); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G59550.1); Has 8622 Blast hits to 8603 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 2413; Fungi - 807; Plants - 4301; Viruses - 28; Other Eukaryotes - 1073 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16566586..16568960 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336792.1 → NP_001318385.1  RING-H2 finger C2A [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22283
    UniProtKB/TrEMBL
    A0A178W067, A0A654F0D0
    Conserved Domains (3) summary
    cd16667
    Location:201 → 242
    RING-H2_RNF126_like; RING finger, H2 subclass, found in RING finger proteins RNF126, RNF115, and similar proteins
    pfam06547
    Location:273 → 354
    DUF1117; Protein of unknown function (DUF1117)
    pfam14369
    Location:5 → 34
    zinc_ribbon_9; zinc-ribbon

  2. NM_129529.4 → NP_030517.1  RING-H2 finger C2A [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_030517.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22283
    UniProtKB/TrEMBL
    A0A178W067, A0A654F0D0
    Conserved Domains (3) summary
    cd16667
    Location:201 → 242
    RING-H2_RNF126_like; RING finger, H2 subclass, found in RING finger proteins RNF126, RNF115, and similar proteins
    pfam06547
    Location:273 → 354
    DUF1117; Protein of unknown function (DUF1117)
    pfam14369
    Location:5 → 34
    zinc_ribbon_9; zinc-ribbon
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O22283.1

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