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glycosyl hydrolase family 17 protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818547, updated on 18-Sep-2024

Summary

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Official Full Name
glycosyl hydrolase family 17 protein
Primary source
TAIR:AT2G39640
Locus tag
AT2G39640
See related
Araport:AT2G39640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12L6.1
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (16525086..16527038, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene Nucleotide-diphospho-sugar transferases superfamily protein Neighboring gene cruciferin (DUF506) Neighboring gene botrytis-induced kinase1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_129520.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glucan endo-1,3-beta-D-glucosidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
glycosyl hydrolase family 17 protein
NP_181494.1
  • glycosyl hydrolase family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT3G55430.1); Has 4106 Blast hits to 2815 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 85; Plants - 4010; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16525086..16527038 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129520.3 → NP_181494.1  glycosyl hydrolase family 17 protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181494.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VR81, A0A5S9X5G4, O48812
    Conserved Domains (2) summary
    smart00768
    Location:358 → 440
    X8; Possibly involved in carbohydrate binding
    cl23725
    Location:30 → 338
    Glyco_hydro; Glycosyl hydrolases
Nucleotide Protein
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