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Low temperature and salt responsive protein family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818475, updated on 18-Sep-2024

Summary

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Official Full Name
Low temperature and salt responsive protein family
Primary source
TAIR:AT2G38905
Locus tag
AT2G38905
See related
Araport:AT2G38905
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (16244061..16244531, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene nuclear factor Y, subunit B1 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Serine protease inhibitor, potato inhibitor I-type family protein Neighboring gene calcium-dependent protein kinase 20 Neighboring gene SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_129448.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Low temperature and salt responsive protein family
NP_565897.1
  • Low temperature and salt responsive protein family; INVOLVED IN: response to cold, hyperosmotic salinity response; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: Low temperature and salt responsive protein family (TAIR:AT3G05880.1); Has 1410 Blast hits to 1410 proteins in 468 species: Archae - 0; Bacteria - 654; Metazoa - 39; Fungi - 295; Plants - 382; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16244061..16244531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129448.3 → NP_565897.1  Low temperature and salt responsive protein family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565897.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W1U1, Q941D7
    Conserved Domains (1) summary
    pfam01679
    Location:5 → 53
    Pmp3; Proteolipid membrane potential modulator
Nucleotide Protein
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