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RNF146 ring finger protein 146 [ Homo sapiens (human) ]

Gene ID: 81847, updated on 27-Nov-2024

Summary

Official Symbol
RNF146provided by HGNC
Official Full Name
ring finger protein 146provided by HGNC
Primary source
HGNC:HGNC:21336
See related
Ensembl:ENSG00000118518 MIM:612137; AllianceGenome:HGNC:21336
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Enables poly-ADP-D-ribose binding activity and ubiquitin-protein transferase activity. Involved in positive regulation of canonical Wnt signaling pathway; protein ubiquitination; and ubiquitin-dependent protein catabolic process. Located in cytosol; nucleoplasm; and plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in fat (RPKM 18.0), lung (RPKM 11.1) and 25 other tissues See more
Orthologs
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Genomic context

See RNF146 in Genome Data Viewer
Location:
6q22.33
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (127266682..127288562)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (128455637..128477520)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (127587827..127609707)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377989 Neighboring gene R-spondin 3 Neighboring gene uncharacterized LOC124901398 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17526 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17527 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25039 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17528 Neighboring gene uncharacterized LOC105377994 Neighboring gene ethylmalonyl-CoA decarboxylase 1 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:127653558-127654108 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:127654109-127654658 Neighboring gene RNA, 5S ribosomal pseudogene 217 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:127664039-127664912 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:127665787-127666660 Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Common variants at 6q22 and 17q21 are associated with intracranial volume.
EBI GWAS Catalog
Genome-wide association study provides evidence for a breast cancer risk locus at 6q22.33.
EBI GWAS Catalog

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • dJ351K20.1, 2610509H23Rik, DKFZp434O1427

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables poly-ADP-D-ribose binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables poly-ADP-D-ribose binding IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables ubiquitin protein ligase activity TAS
Traceable Author Statement
more info
 
enables ubiquitin-protein transferase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables ubiquitin-protein transferase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytosol IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
E3 ubiquitin-protein ligase RNF146
Names
RING-type E3 ubiquitin transferase RNF146
dactylidin
iduna
NP_001229773.1
NP_001229774.1
NP_001229775.1
NP_001229776.1
NP_001229777.1
NP_001229778.1
NP_001229779.1
NP_001229780.1
NP_001229781.1
NP_112225.2
XP_011534463.1
XP_011534465.1
XP_011534466.1
XP_016866825.1
XP_047275342.1
XP_047275343.1
XP_047275344.1
XP_047275345.1
XP_054212474.1
XP_054212475.1
XP_054212476.1
XP_054212477.1
XP_054212478.1
XP_054212479.1
XP_054212480.1
XP_054212481.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001242844.2NP_001229773.1  E3 ubiquitin-protein ligase RNF146 isoform a

    See identical proteins and their annotated locations for NP_001229773.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the shorter isoform (a). Variants 1-7 encode the same isoform (a).
    Source sequence(s)
    AJ420549, DA639989
    Consensus CDS
    CCDS5136.1
    UniProtKB/Swiss-Prot
    Q9NTX7
    Conserved Domains (2) summary
    smart00678
    Location:103175
    WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
    cd16546
    Location:3574
    RING-HC_RNF146; RING finger, HC subclass, found in RING finger protein 146 (RNF146) and similar proteins
  2. NM_001242845.2NP_001229774.1  E3 ubiquitin-protein ligase RNF146 isoform a

    See identical proteins and their annotated locations for NP_001229774.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Variants 1-7 encode the same isoform (a).
    Source sequence(s)
    AJ420549, BI669435, DA707096, DB267873
    Consensus CDS
    CCDS5136.1
    UniProtKB/Swiss-Prot
    Q9NTX7
    Conserved Domains (2) summary
    smart00678
    Location:103175
    WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
    cd16546
    Location:3574
    RING-HC_RNF146; RING finger, HC subclass, found in RING finger protein 146 (RNF146) and similar proteins
  3. NM_001242846.2NP_001229775.1  E3 ubiquitin-protein ligase RNF146 isoform a

    See identical proteins and their annotated locations for NP_001229775.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR, compared to variant 1. Variants 1-7 encode the same isoform (a).
    Source sequence(s)
    AJ420549, DA043259, DB267873
    Consensus CDS
    CCDS5136.1
    UniProtKB/Swiss-Prot
    Q9NTX7
    Related
    ENSP00000477168.1, ENST00000608991.5
    Conserved Domains (2) summary
    smart00678
    Location:103175
    WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
    cd16546
    Location:3574
    RING-HC_RNF146; RING finger, HC subclass, found in RING finger protein 146 (RNF146) and similar proteins
  4. NM_001242847.2NP_001229776.1  E3 ubiquitin-protein ligase RNF146 isoform a

    See identical proteins and their annotated locations for NP_001229776.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR, compared to variant 1. Variants 1-7 encode the same isoform (a).
    Source sequence(s)
    AJ420549, DA707096
    UniProtKB/Swiss-Prot
    Q9NTX7
    Conserved Domains (2) summary
    smart00678
    Location:103175
    WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
    cd16546
    Location:3574
    RING-HC_RNF146; RING finger, HC subclass, found in RING finger protein 146 (RNF146) and similar proteins
  5. NM_001242848.2NP_001229777.1  E3 ubiquitin-protein ligase RNF146 isoform a

    See identical proteins and their annotated locations for NP_001229777.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) differs in the 5' UTR, compared to variant 1. Variants 1-7 encode the same isoform (a).
    Source sequence(s)
    AJ420549, DA145911
    UniProtKB/Swiss-Prot
    Q9NTX7
    Conserved Domains (2) summary
    smart00678
    Location:103175
    WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
    cd16546
    Location:3574
    RING-HC_RNF146; RING finger, HC subclass, found in RING finger protein 146 (RNF146) and similar proteins
  6. NM_001242849.2NP_001229778.1  E3 ubiquitin-protein ligase RNF146 isoform b

    See identical proteins and their annotated locations for NP_001229778.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8) lacks two alternate internal exons, which results in the use of an upstream start codon, compared to variant 1. The encoded isoform (b) has a longer N-terminus than isoform a. Variants 8-10 encode the same isoform (b).
    Source sequence(s)
    AI929027, AJ420549, CN388414
    Consensus CDS
    CCDS56449.1
    UniProtKB/Swiss-Prot
    E1P572, Q6FIB2, Q7L8H4, Q96K03, Q96T06, Q9NTX6, Q9NTX7
    Related
    ENSP00000476814.1, ENST00000610153.1
    Conserved Domains (2) summary
    smart00678
    Location:104176
    WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
    cd16546
    Location:3675
    RING-HC_RNF146; RING finger, HC subclass, found in RING finger protein 146 (RNF146) and similar proteins
  7. NM_001242850.2NP_001229779.1  E3 ubiquitin-protein ligase RNF146 isoform b

    See identical proteins and their annotated locations for NP_001229779.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (9) lacks two alternate internal exons, which results in the use of an upstream start codon, compared to variant 1. The encoded isoform (b) has a longer N-terminus than isoform a. Variants 8-10 encode the same isoform (b).
    Source sequence(s)
    AJ420549, AK027558
    Consensus CDS
    CCDS56449.1
    UniProtKB/Swiss-Prot
    E1P572, Q6FIB2, Q7L8H4, Q96K03, Q96T06, Q9NTX6, Q9NTX7
    Related
    ENSP00000357297.1, ENST00000368314.6
    Conserved Domains (2) summary
    smart00678
    Location:104176
    WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
    cd16546
    Location:3675
    RING-HC_RNF146; RING finger, HC subclass, found in RING finger protein 146 (RNF146) and similar proteins
  8. NM_001242851.1NP_001229780.1  E3 ubiquitin-protein ligase RNF146 isoform b

    See identical proteins and their annotated locations for NP_001229780.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (10) contains an alternate 5' terminal exon and lacks two alternate internal exons, which results in the use of an upstream start codon, compared to variant 1. The encoded isoform (b) has a longer N-terminus than isoform a. Variants 8-10 encode the same isoform (b).
    Source sequence(s)
    AJ420549, BG708628, BI771613
    Consensus CDS
    CCDS56449.1
    UniProtKB/Swiss-Prot
    E1P572, Q6FIB2, Q7L8H4, Q96K03, Q96T06, Q9NTX6, Q9NTX7
    Conserved Domains (2) summary
    smart00678
    Location:104176
    WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
    cd16546
    Location:3675
    RING-HC_RNF146; RING finger, HC subclass, found in RING finger protein 146 (RNF146) and similar proteins
  9. NM_001242852.2NP_001229781.1  E3 ubiquitin-protein ligase RNF146 isoform a

    See identical proteins and their annotated locations for NP_001229781.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) differs in the 5' UTR, compared to variant 1. Variants 1-4 and variant 7 encode the same isoform.
    Source sequence(s)
    AI929027, AJ420549, AL136829, DA826982
    Consensus CDS
    CCDS5136.1
    UniProtKB/Swiss-Prot
    Q9NTX7
    Conserved Domains (2) summary
    smart00678
    Location:103175
    WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
    cd16546
    Location:3574
    RING-HC_RNF146; RING finger, HC subclass, found in RING finger protein 146 (RNF146) and similar proteins
  10. NM_030963.4NP_112225.2  E3 ubiquitin-protein ligase RNF146 isoform a

    See identical proteins and their annotated locations for NP_112225.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1-7 encode the same isoform (a).
    Source sequence(s)
    AJ420549, AL136829, DB267873
    Consensus CDS
    CCDS5136.1
    UniProtKB/Swiss-Prot
    Q9NTX7
    Conserved Domains (2) summary
    smart00678
    Location:103175
    WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
    cd16546
    Location:3574
    RING-HC_RNF146; RING finger, HC subclass, found in RING finger protein 146 (RNF146) and similar proteins

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    127266682..127288562
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017011336.3XP_016866825.1  E3 ubiquitin-protein ligase RNF146 isoform X1

    UniProtKB/Swiss-Prot
    E1P572, Q6FIB2, Q7L8H4, Q96K03, Q96T06, Q9NTX6, Q9NTX7
    Conserved Domains (2) summary
    smart00678
    Location:104176
    WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
    cd16546
    Location:3675
    RING-HC_RNF146; RING finger, HC subclass, found in RING finger protein 146 (RNF146) and similar proteins
  2. XM_047419389.1XP_047275345.1  E3 ubiquitin-protein ligase RNF146 isoform X2

  3. XM_047419386.1XP_047275342.1  E3 ubiquitin-protein ligase RNF146 isoform X2

  4. XM_047419388.1XP_047275344.1  E3 ubiquitin-protein ligase RNF146 isoform X2

  5. XM_011536161.4XP_011534463.1  E3 ubiquitin-protein ligase RNF146 isoform X2

    See identical proteins and their annotated locations for XP_011534463.1

    UniProtKB/Swiss-Prot
    Q9NTX7
    Conserved Domains (2) summary
    smart00678
    Location:103175
    WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
    cd16546
    Location:3574
    RING-HC_RNF146; RING finger, HC subclass, found in RING finger protein 146 (RNF146) and similar proteins
  6. XM_011536163.4XP_011534465.1  E3 ubiquitin-protein ligase RNF146 isoform X2

    See identical proteins and their annotated locations for XP_011534465.1

    UniProtKB/Swiss-Prot
    Q9NTX7
    Conserved Domains (2) summary
    smart00678
    Location:103175
    WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
    cd16546
    Location:3574
    RING-HC_RNF146; RING finger, HC subclass, found in RING finger protein 146 (RNF146) and similar proteins
  7. XM_011536164.4XP_011534466.1  E3 ubiquitin-protein ligase RNF146 isoform X2

    See identical proteins and their annotated locations for XP_011534466.1

    UniProtKB/Swiss-Prot
    Q9NTX7
    Conserved Domains (2) summary
    smart00678
    Location:103175
    WWE; Domain in Deltex and TRIP12 homologues. Possibly involved in regulation of ubiquitin-mediated proteolysis
    cd16546
    Location:3574
    RING-HC_RNF146; RING finger, HC subclass, found in RING finger protein 146 (RNF146) and similar proteins
  8. XM_047419387.1XP_047275343.1  E3 ubiquitin-protein ligase RNF146 isoform X2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    128455637..128477520
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054356499.1XP_054212474.1  E3 ubiquitin-protein ligase RNF146 isoform X1

    UniProtKB/Swiss-Prot
    E1P572, Q6FIB2, Q7L8H4, Q96K03, Q96T06, Q9NTX6, Q9NTX7
  2. XM_054356503.1XP_054212478.1  E3 ubiquitin-protein ligase RNF146 isoform X2

  3. XM_054356500.1XP_054212475.1  E3 ubiquitin-protein ligase RNF146 isoform X2

  4. XM_054356502.1XP_054212477.1  E3 ubiquitin-protein ligase RNF146 isoform X2

  5. XM_054356504.1XP_054212479.1  E3 ubiquitin-protein ligase RNF146 isoform X2

  6. XM_054356505.1XP_054212480.1  E3 ubiquitin-protein ligase RNF146 isoform X2

  7. XM_054356506.1XP_054212481.1  E3 ubiquitin-protein ligase RNF146 isoform X2

  8. XM_054356501.1XP_054212476.1  E3 ubiquitin-protein ligase RNF146 isoform X2