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DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818464, updated on 18-Sep-2024

Summary

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Official Full Name
DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506)
Primary source
TAIR:AT2G38820
Locus tag
AT2G38820
See related
Araport:AT2G38820
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13I13.5; F13I13_5
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (16221815..16223746)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Plant calmodulin-binding protein-like protein Neighboring gene histone H2A 8 Neighboring gene uncharacterized protein Neighboring gene Ubiquitin-conjugating enzyme/RWD-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001336739.1
NM_201907.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506)
NP_001318378.1
  • Protein of unknown function (DUF506); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT3G22970.1); Has 400 Blast hits to 398 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 398; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
NP_973636.1
  • Protein of unknown function (DUF506); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT3G22970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16221815..16223746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_201907.2 → NP_973636.1  DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973636.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VML5, A0A5S9X575, F4ITY1
    Conserved Domains (1) summary
    pfam04720
    Location:75 → 282
    PDDEXK_6; PDDEXK-like family of unknown function

  2. NM_001336739.1 → NP_001318378.1  DNA-directed RNA polymerase subunit beta-beta protein, putative (DUF506) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4ITY2
Nucleotide Protein
Heading Accession and Version

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