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Uncharacterized protein family (UPF0497) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818430, updated on 18-Sep-2024

Summary

Official Full Name
Uncharacterized protein family (UPF0497)
Primary source
TAIR:AT2G38480
Locus tag
AT2G38480
See related
Araport:AT2G38480
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CASP-like protein 4B1; CASPL4B1; T19C21.23
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Genomic context

Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (16110741..16111911, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene WRKY DNA-binding protein 33 Neighboring gene CBL-interacting Serine/Threonine-kinase Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

General gene information

NM_129405.4

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in nucleus  

General protein information

Preferred Names
Uncharacterized protein family (UPF0497)
NP_565891.1
  • Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G36330.1); Has 221 Blast hits to 221 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 221; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16110741..16111911 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129405.4 → NP_565891.1  Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565891.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80903, Q8LE26, Q94K27
    UniProtKB/TrEMBL
    A0A178VRT0, A0A5S9X5N3
    Conserved Domains (1) summary
    pfam04535
    Location:41 → 170
    DUF588; Domain of unknown function (DUF588)
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