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MATE efflux family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818413, updated on 18-Sep-2024

Summary

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Official Full Name
MATE efflux family protein
Primary source
TAIR:AT2G38330
Locus tag
AT2G38330
See related
Araport:AT2G38330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T19C21.18; T19C21_18
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Genomic context

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Location:
chromosome: 2
Exon count:
13
Sequence:
Chromosome: 2; NC_003071.7 (16064503..16067437)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene ncRNA Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_129389.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables antiporter activity IEA
Inferred from Electronic Annotation
more info
  
enables xenobiotic transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
MATE efflux family protein
NP_181367.2
  • MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G38380.1); Has 17219 Blast hits to 17166 proteins in 2310 species: Archae - 394; Bacteria - 13798; Metazoa - 83; Fungi - 156; Plants - 607; Viruses - 0; Other Eukaryotes - 2181 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16064503..16067437
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129389.3 → NP_181367.2  MATE efflux family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181367.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80918, Q84K71
    UniProtKB/TrEMBL
    A0A178VTF1, A0A5S9X582
    Conserved Domains (1) summary
    cd13136
    Location:94 → 505
    MATE_DinF_like; DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84K71.1

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