U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Fatty acid hydroxylase superfamily [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818347, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Fatty acid hydroxylase superfamily
Primary source
TAIR:AT2G37700
Locus tag
AT2G37700
See related
Araport:AT2G37700
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13M22.20; F13M22_20
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
10
Sequence:
Chromosome: 2; NC_003071.7 (15810520..15814218, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene far-red elongated hypocotyl 1 Neighboring gene glucose-induced degradation-like protein Neighboring gene phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase Neighboring gene receptor lectin kinase Neighboring gene TRICHOME BIREFRINGENCE-LIKE 15

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_001124992.2
NM_129326.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in lipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Fatty acid hydroxylase superfamily
NP_001118464.1
  • Fatty acid hydroxylase superfamily; FUNCTIONS IN: oxidoreductase activity, iron ion binding, catalytic activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT1G02190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_181306.3
  • Fatty acid hydroxylase superfamily; FUNCTIONS IN: oxidoreductase activity, iron ion binding, catalytic activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT1G02190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    15810520..15814218 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336672.1 → NP_001325049.1  Fatty acid hydroxylase superfamily [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VTW4, A0A1P8B1Z3

  2. NM_001336671.1 → NP_001325048.1  Fatty acid hydroxylase superfamily [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VTW4, A0A1P8B1Z1, A0A654F151
    Conserved Domains (1) summary
    PLN02869
    Location:1 → 619
    PLN02869; fatty aldehyde decarbonylase

  3. NM_129326.3 → NP_181306.3  Fatty acid hydroxylase superfamily [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181306.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3H5B0, F4IR05, O80938
    UniProtKB/TrEMBL
    A0A178VTW4
    Conserved Domains (3) summary
    PLN02869
    Location:1 → 610
    PLN02869; fatty aldehyde decarbonylase
    pfam04116
    Location:128 → 268
    FA_hydroxylase; Fatty acid hydroxylase superfamily
    pfam12076
    Location:448 → 605
    Wax2_C; WAX2 C-terminal domain

  4. NM_001124992.2 → NP_001118464.1  Fatty acid hydroxylase superfamily [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118464.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IR05
    Conserved Domains (3) summary
    PLN02869
    Location:1 → 475
    PLN02869; fatty aldehyde decarbonylase
    pfam04116
    Location:128 → 268
    FA_hydroxylase; Fatty acid hydroxylase superfamily
    pfam12076
    Location:448 → 472
    Wax2_C; WAX2 C-terminal domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4IR05.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.