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EXP3 Barwin-like endoglucanases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818341, updated on 18-Sep-2024

Summary

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Official Symbol
EXP3
Official Full Name
Barwin-like endoglucanases superfamily protein
Primary source
TAIR:AT2G37640
Locus tag
AT2G37640
See related
Araport:AT2G37640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA EXPANSIN A3; ATEXP3; ATEXPA3; ATHEXP ALPHA 1.9; EXPANSIN 3; F13M22.14; F13M22_14
Summary
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
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Genomic context

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See EXP3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (15787523..15790139, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene actin 1 Neighboring gene myb-like HTH transcriptional regulator family protein Neighboring gene GRAS family transcription factor Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene Transducin/WD40 repeat-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expansins are involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Wieczorek K, et al. Plant J, 2006 Oct. PMID 16942607
  2. PIL5, a phytochrome-interacting bHLH protein, regulates gibberellin responsiveness by binding directly to the GAI and RGA promoters in Arabidopsis seeds. Oh E, et al. Plant Cell, 2007 Apr. PMID 17449805, Free PMC Article
  3. Expansins: ever-expanding numbers and functions. Lee Y, et al. Curr Opin Plant Biol, 2001 Dec. PMID 11641069
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001336666.1
NM_129320.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within plant-type cell wall loosening NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in plant-type cell wall organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to gibberellin TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within response to red light IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within syncytium formation IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within unidimensional cell growth NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Barwin-like endoglucanases superfamily protein
NP_181300.1
  • EXP3; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A4 (TAIR:AT2G39700.1); Has 2147 Blast hits to 2144 proteins in 153 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 34; Plants - 2079; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    15787523..15790139 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129320.4 → NP_181300.1  Barwin-like endoglucanases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181300.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80932
    UniProtKB/TrEMBL
    A0A178VPK3, A0A5S9X4W4, A0A7G2ECA8
    Conserved Domains (1) summary
    PLN00050
    Location:33 → 260
    PLN00050; expansin A; Provisional

  2. NM_001336666.1 → NP_001324717.1  Barwin-like endoglucanases superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B103
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O80932.1

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