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AGD7 ARF-GAP domain 7 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818331, updated on 18-Sep-2024

Summary

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Official Symbol
AGD7
Official Full Name
ARF-GAP domain 7
Primary source
TAIR:AT2G37550
Locus tag
AT2G37550
See related
Araport:AT2G37550
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARF-GAP domain 7; ASP1; F13M22.5; F13M22_5; yeast pde1 suppressor 1
Summary
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
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Genomic context

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See AGD7 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (15755078..15757601, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein Neighboring gene forkhead box protein G1 Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene ncRNA Neighboring gene origin recognition complex second largest subunit 2 Neighboring gene HSP20-like chaperones superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Overexpression of Arabidopsis AGD7 causes relocation of Golgi-localized proteins to the endoplasmic reticulum and inhibits protein trafficking in plant cells. Min MK, et al. Plant Physiol, 2007 Apr. PMID 17307897, Free PMC Article
  2. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
  3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036426.1
NM_129310.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus ISM
Inferred from Sequence Model
more info
  
located_in cytoplasmic stress granule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in endoplasmic reticulum HDA PubMed 

General protein information

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Preferred Names
ARF-GAP domain 7
NP_001031503.1
  • ARF-GAP domain 7 (AGD7); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 6 (TAIR:AT3G53710.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_181291.1
  • ARF-GAP domain 7 (AGD7); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 6 (TAIR:AT3G53710.2); Has 3753 Blast hits to 3670 proteins in 253 species: Archae - 0; Bacteria - 30; Metazoa - 1888; Fungi - 664; Plants - 561; Viruses - 0; Other Eukaryotes - 610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    15755078..15757601 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129310.3 → NP_181291.1  ARF-GAP domain 7 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181291.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80925
    UniProtKB/TrEMBL
    A0A178VYR1, A0A5S9X4U5, A0A7G2EH59
    Conserved Domains (2) summary
    COG5347
    Location:5 → 258
    COG5347; GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
    cd08830
    Location:3 → 117
    ArfGap_ArfGap1; Arf1 GTPase-activating protein 1

  2. NM_001036426.1 → NP_001031503.1  ARF-GAP domain 7 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031503.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80925
    UniProtKB/TrEMBL
    A0A178VYR1, A0A5S9X4U5, A0A7G2EH59
    Conserved Domains (2) summary
    COG5347
    Location:5 → 258
    COG5347; GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
    cd08830
    Location:3 → 117
    ArfGap_ArfGap1; Arf1 GTPase-activating protein 1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O80925.1

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