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TCP family transcription factor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818274, updated on 18-Sep-2024

Summary

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Official Full Name
TCP family transcription factor
Primary source
TAIR:AT2G37000
Locus tag
AT2G37000
See related
Araport:AT2G37000
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T1J8.18; T1J8_18
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (15540246..15541248)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene DVL family protein Neighboring gene RNApolymerase sigma-subunit F Neighboring gene non-intrinsic ABC protein 12 Neighboring gene Translin family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TCP transcription factors link the regulation of genes encoding mitochondrial proteins with the circadian clock in Arabidopsis thaliana. Giraud E, et al. Plant Cell, 2010 Dec. PMID 21183706, Free PMC Article
  2. Analysis of functional redundancies within the Arabidopsis TCP transcription factor family. Danisman S, et al. J Exp Bot, 2013 Dec. PMID 24129704, Free PMC Article
  3. SPOROCYTELESS is a novel embryophyte-specific transcription repressor that interacts with TPL and TCP proteins in Arabidopsis. Chen GH, et al. J Genet Genomics, 2014 Dec 20. PMID 25527103
  4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_129256.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within circadian rhythm IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TCP family transcription factor
NP_181237.1
  • TCP family transcription factor; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT1G58100.1); Has 346 Blast hits to 346 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 346; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    15540246..15541248
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129256.3 → NP_181237.1  TCP family transcription factor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181237.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SJK7
    UniProtKB/TrEMBL
    A0A178VXU1, A0A5S9X4P8, A0A654FA61
    Conserved Domains (1) summary
    cl23822
    Location:43 → 102
    TCP; TCP family transcription factor
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SJK7.1

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