RAX2 Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: RAX2
Official Full Name: Duplicated homeodomain-like superfamily protein
Primary source: TAIR:AT2G36890
Locus tag: AT2G36890
See related: Araport:AT2G36890
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ATMYB38; BIT1; BLUE INSENSITIVE TRAIT 1; MYB DOMAIN PROTEIN 38; MYB38; REGULATOR OF AXILLARY MERISTEMS 2; T1J8.7; T1J8_7
Summary: ''Putative homolog of the Blind gene in tomato. Together with RAX1 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB38, regulates axillary meristem formation. ''
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Genomic context

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See RAX2 in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 3

Sequence:: Chromosome: 2; NC_003071.7 (15485619..15487451)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The MYB transcription factor Blue Insensitive Trait 1 (BIT1) functions as a positive element in blue light signaling. [BIT1]
Title: CRY1 inhibits COP1-mediated degradation of BIT1, a MYB transcription factor, to activate blue light-dependent gene expression in Arabidopsis.
rax mutants show new phenotypes that are characterized by defects in lateral bud formation in overlapping zones along the shoot axis. RAX genes are partially redundant in function and allow a fine-tuning of secondary axis formation [RAX2]
Title: Blind homologous R2R3 Myb genes control the pattern of lateral meristem initiation in Arabidopsis.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_129245.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within blue light signaling pathway	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Duplicated homeodomain-like superfamily protein

NP_181226.1

REGULATOR OF AXILLARY MERISTEMS 2 (RAX2); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 37 (TAIR:AT5G23000.1); Has 8785 Blast hits to 8145 proteins in 459 species: Archae - 0; Bacteria - 0; Metazoa - 710; Fungi - 476; Plants - 5916; Viruses - 4; Other Eukaryotes - 1679 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

15485619..15487451

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001336612.1 → NP_001324751.1 Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8B126, A0A7G2EGY6

Conserved Domains (1) summary

PLN03091
Location:42 → 158

PLN03091; hypothetical protein; Provisional
NM_129245.3 → NP_181226.1 Duplicated homeodomain-like superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_181226.1

Status: REVIEWED

UniProtKB/Swiss-Prot

A5YZ54, A5YZ55, A5YZ66, Q6R0A1, Q9SJL7, Q9ZTE4

UniProtKB/TrEMBL

A0A178VS31, A0A5S9X4L9, A0A7G2EGY6

Conserved Domains (1) summary

PLN03091
Location:1 → 117

PLN03091; hypothetical protein; Provisional