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transcriptional activator (DUF662) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818215, updated on 18-Sep-2024

Summary

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Official Full Name
transcriptional activator (DUF662)
Primary source
TAIR:AT2G36410
Locus tag
AT2G36410
See related
Araport:AT2G36410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1O11.4; F1O11_4
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Genomic context

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Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (15278517..15280726)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene growth-regulating factor 3 Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene nucleolin-like protein Neighboring gene transmembrane protein, putative (DUF247)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001336597.1
NM_129198.3
NM_179934.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in endoplasmic reticulum HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
transcriptional activator (DUF662)
NP_001318363.1
  • Family of unknown function (DUF662); LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT3G52920.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_565846.1
  • Family of unknown function (DUF662); LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT3G52920.1); Has 2751 Blast hits to 2501 proteins in 387 species: Archae - 87; Bacteria - 330; Metazoa - 1053; Fungi - 166; Plants - 353; Viruses - 20; Other Eukaryotes - 742 (source: NCBI BLink).
NP_850265.1
  • Family of unknown function (DUF662); LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF662 (InterPro:IPR007033); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF662) (TAIR:AT3G52920.2); Has 1971 Blast hits to 1842 proteins in 339 species: Archae - 58; Bacteria - 254; Metazoa - 781; Fungi - 127; Plants - 214; Viruses - 6; Other Eukaryotes - 531 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    15278517..15280726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179934.2 → NP_850265.1  transcriptional activator (DUF662) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850265.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VVX8, Q3EBM1, Q8LCV2
    Conserved Domains (1) summary
    pfam04949
    Location:41 → 191
    Transcrip_act; Transcriptional activator

  2. NM_129198.3 → NP_565846.1  transcriptional activator (DUF662) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565846.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VU90, Q8LCV2, Q9SJR4
    Conserved Domains (1) summary
    pfam04949
    Location:41 → 194
    Transcrip_act; Transcriptional activator

  3. NM_001336597.1 → NP_001318363.1  transcriptional activator (DUF662) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q2V422
Nucleotide Protein
Heading Accession and Version

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