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Uncharacterized protein family (UPF0497) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818206, updated on 18-Sep-2024

Summary

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Official Full Name
Uncharacterized protein family (UPF0497)
Primary source
TAIR:AT2G36330
Locus tag
AT2G36330
See related
Araport:AT2G36330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CASP-like protein 4A3; CASPL4A3; F2H17.6; F2H17_6
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (15233500..15235528)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene A20/AN1-like zinc finger family protein Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene DNA-binding storekeeper protein-related transcriptional regulator Neighboring gene Protein kinase superfamily protein Neighboring gene RAB6-interacting golgin (DUF662) Neighboring gene Galactose oxidase/kelch repeat superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_129190.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Uncharacterized protein family (UPF0497)
NP_181174.2
  • Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT5G62820.1); Has 241 Blast hits to 239 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 1; Plants - 232; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    15233500..15235528
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336594.1 → NP_001324366.1  Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VV69, A0A1P8AZV7
    Conserved Domains (1) summary
    pfam04535
    Location:132 → 220
    DUF588; Domain of unknown function (DUF588)

  2. NM_129190.3 → NP_181174.2  Uncharacterized protein family (UPF0497) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181174.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84WP5, Q9SJM5
    UniProtKB/TrEMBL
    A0A178VXW4, A0A5S9X4M5
    Conserved Domains (1) summary
    pfam04535
    Location:132 → 265
    DUF588; Domain of unknown function (DUF588)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84WP5.1

Gene LinkOut

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