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Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818170, updated on 18-Sep-2024

Summary

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Official Full Name
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Primary source
TAIR:AT2G35970
Locus tag
AT2G35970
See related
Araport:AT2G35970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F11F19.12; F11F19_12
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (15109007..15109773)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene embryo sac development arrest 12 Neighboring gene NDR1/HIN1-like 12 Neighboring gene uncharacterized protein Neighboring gene Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family Neighboring gene Putative lysine decarboxylase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in defense response to other organism IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
NP_181141.1
  • Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: NDR1/HIN1-like 22 (TAIR:AT4G09590.1); Has 808 Blast hits to 808 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 808; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    15109007..15109773
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129156.1 → NP_181141.1  Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181141.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VSW4, A0A5S9X4B9, Q9SJ53
    Conserved Domains (1) summary
    pfam03168
    Location:76 → 180
    LEA_2; Late embryogenesis abundant protein
Nucleotide Protein
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