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FIS2 VEFS-Box of polycomb protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818136, updated on 14-Nov-2024

Summary

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Official Symbol
FIS2
Official Full Name
VEFS-Box of polycomb protein
Primary source
TAIR:AT2G35670
Locus tag
AT2G35670
See related
Araport:AT2G35670
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
FERTILIZATION INDEPENDENT SEED 2; FERTILIZATION-INDEPENDENT ENDOSPERM 2; FERTILIZATION-INDEPENDENT SEED 2 PROTEIN; FIE2; T20F21.14; T20F21_14
Summary
Encodes a negative regulator of seed development in the absence of pollination. In the ovule, the FIS2 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization.
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Genomic context

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See FIS2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Sequence:
Chromosome: 2; NC_003071.7 (14992565..14996756)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Phosphotyrosine protein phosphatases superfamily protein Neighboring gene ncRNA Neighboring gene acyl-CoA oxidase 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genes controlling fertilization-independent seed development in Arabidopsis thaliana. Luo M, et al. Proc Natl Acad Sci U S A, 1999 Jan 5. PMID 9874812, Free PMC Article
  2. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Zhang S, et al. Plant Physiol, 2018 May. PMID 29523711, Free PMC Article
  3. Maintenance of DNA methylation during the Arabidopsis life cycle is essential for parental imprinting. Jullien PE, et al. Plant Cell, 2006 Jun. PMID 16648367, Free PMC Article
  4. Expression and parent-of-origin effects for FIS2, MEA, and FIE in the endosperm and embryo of developing Arabidopsis seeds. Luo M, et al. Proc Natl Acad Sci U S A, 2000 Sep 12. PMID 10962025, Free PMC Article
  5. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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NM_129122.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within DNA methylation-dependent constitutive heterochromatin formation IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
acts_upstream_of_or_within regulation of endosperm development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
VEFS-Box of polycomb protein
NP_565815.2
  • FERTILIZATION INDEPENDENT SEED 2 (FIS2); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Polycomb protein, VEFS-Box (InterPro:IPR019135); BEST Arabidopsis thaliana protein match is: VEFS-Box of polycomb protein (TAIR:AT4G16845.2); Has 12278 Blast hits to 7688 proteins in 680 species: Archae - 7; Bacteria - 1319; Metazoa - 4326; Fungi - 1979; Plants - 496; Viruses - 125; Other Eukaryotes - 4026 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14992565..14996756
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129122.3 → NP_565815.2  VEFS-Box of polycomb protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565815.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P0DKJ8, Q0QMM9, Q9ZNT9, Q9ZQP0
    UniProtKB/TrEMBL
    A0A5S9X481, A0A654F9T1
    Conserved Domains (1) summary
    pfam09733
    Location:589 → 726
    VEFS-Box; VEFS-Box of polycomb protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DKJ8.1

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