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bZIP16 basic region/leucine zipper transcription factor 16 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818118, updated on 18-Sep-2024

Summary

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Official Symbol
bZIP16
Official Full Name
basic region/leucine zipper transcription factor 16
Primary source
TAIR:AT2G35530
Locus tag
AT2G35530
See related
Araport:AT2G35530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtbZIP16; basic region/leucine zipper transcription factor 16; T32F12.9; T32F12_9
Summary
Encodes a G group bZIP transcription factor family member that can bind cis elements with an ACGT core, such as G-box, Hex, C-box and As-1. The protein is localized in the nucleus and can homodimerize and can heterodimerize with other G group members.
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Genomic context

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See bZIP16 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Sequence:
Chromosome: 2; NC_003071.7 (14922836..14926609, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene shikimate kinase like 2 Neighboring gene uncharacterized protein Neighboring gene Defender against death (DAD family) protein Neighboring gene DNAJ heat shock N-terminal domain-containing protein Neighboring gene basic pentacysteine 7 Neighboring gene serpin

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis bZIP16 transcription factor integrates light and hormone signaling pathways to regulate early seedling development. Hsieh WP, et al. Plant Cell, 2012 Oct. PMID 23104829, Free PMC Article
  2. An interplay between bZIP16, bZIP68, and GBF1 regulates nuclear photosynthetic genes during photomorphogenesis in Arabidopsis. Norén Lindbäck L, et al. New Phytol, 2023 Nov. PMID 37602940, Free PMC Article
  3. Redox-mediated mechanisms regulate DNA binding activity of the G-group of basic region leucine zipper (bZIP) transcription factors in Arabidopsis. Shaikhali J, et al. J Biol Chem, 2012 Aug 10. PMID 22718771, Free PMC Article
  4. GIP1 protein is a novel cofactor that regulates DNA-binding affinity of redox-regulated members of bZIP transcription factors involved in the early stages of Arabidopsis development. Shaikhali J. Protoplasma, 2015 May. PMID 25387999
  5. AtbZIP16 and AtbZIP68, two new members of GBFs, can interact with other G group bZIPs in Arabidopsis thaliana. Shen H, et al. BMB Rep, 2008 Feb 29. PMID 18315949

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. An interplay between bZIP16, bZIP68, and GBF1 regulates nuclear photosynthetic genes during photomorphogenesis in Arabidopsis.
    Title: An interplay between bZIP16, bZIP68, and GBF1 regulates nuclear photosynthetic genes during photomorphogenesis in Arabidopsis.
  2. bZIP16 functions to promote seed germination and hypocotyl elongation during the early stages of Arabidopsis seedling development.
    Title: Arabidopsis bZIP16 transcription factor integrates light and hormone signaling pathways to regulate early seedling development.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_179917.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
basic region/leucine zipper transcription factor 16
NP_850248.2
  • basic region/leucine zipper transcription factor 16 (bZIP16); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), G-box binding, MFMR (InterPro:IPR012900), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: basic region/leucine zipper transcription factor 68 (TAIR:AT1G32150.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14922836..14926609 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179917.4 → NP_850248.2  basic region/leucine zipper transcription factor 16 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850248.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O82288, Q501B2
    UniProtKB/TrEMBL
    A0A178VPW6, A0A5S9X461, A0A654F9R2
    Conserved Domains (3) summary
    smart00338
    Location:304 → 367
    BRLZ; basic region leucin zipper
    pfam07777
    Location:1 → 103
    MFMR; G-box binding protein MFMR
    pfam16596
    Location:142 → 272
    MFMR_assoc; Disordered region downstream of MFMR
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q501B2.1

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