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EDA18 RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818057, updated on 18-Sep-2024

Summary

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Official Symbol
EDA18
Official Full Name
RING/U-box superfamily protein
Primary source
TAIR:AT2G34920
Locus tag
AT2G34920
See related
Araport:AT2G34920
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
embryo sac development arrest 18; F19I3.15; F19I3_15
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Genomic context

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See EDA18 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (14728027..14731255, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene CTP synthase family protein Neighboring gene Transcription factor GTE6 Neighboring gene root hair specific protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene CLAVATA3/ESR-RELATED 42 Neighboring gene miscRNA Neighboring gene disease resistance family protein / LRR family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A collection of Ds insertional mutants associated with defects in male gametophyte development and function in Arabidopsis thaliana. Boavida LC, et al. Genetics, 2009 Apr. PMID 19237690, Free PMC Article
  2. Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Pagnussat GC, et al. Development, 2005 Feb. PMID 15634699
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001336534.1
NM_129045.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within embryo sac development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within pollen development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/U-box superfamily protein
NP_181038.2
  • embryo sac development arrest 18 (EDA18); FUNCTIONS IN: zinc ion binding; INVOLVED IN: embryo sac development, pollen development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G30860.1); Has 2267 Blast hits to 2247 proteins in 225 species: Archae - 3; Bacteria - 29; Metazoa - 1450; Fungi - 60; Plants - 428; Viruses - 44; Other Eukaryotes - 253 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14728027..14731255 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129045.2 → NP_181038.2  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181038.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654EYW9, F4IIX4
    Conserved Domains (1) summary
    pfam13920
    Location:595 → 643
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

  2. NM_001336534.1 → NP_001324447.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B041, A0A654EYW9
Nucleotide Protein
Heading Accession and Version

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