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MEE20 ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817983, updated on 18-Sep-2024

Summary

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Official Symbol
MEE20
Official Full Name
ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629)
Primary source
TAIR:AT2G34220
Locus tag
AT2G34220
See related
Araport:AT2G34220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F13P17.6; F13P17_6; maternal effect embryo arrest 20
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Genomic context

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See MEE20 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (14450536..14453856)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Transcription elongation factor Spt5 Neighboring gene uncharacterized protein Neighboring gene ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A collection of Ds insertional mutants associated with defects in male gametophyte development and function in Arabidopsis thaliana. Boavida LC, et al. Genetics, 2009 Apr. PMID 19237690, Free PMC Article
  2. Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Pagnussat GC, et al. Development, 2005 Feb. PMID 15634699
  3. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Bae MS, et al. Plant J, 2003 Dec. PMID 14617066
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_001336496.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within pollen development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in nucleus HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629)
NP_001318348.1
  • maternal effect embryo arrest 20 (MEE20); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy, pollen development; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Protein with domains of unknown function (DUF627 and DUF629) (TAIR:AT2G34230.1); Has 91 Blast hits to 91 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14450536..14453856
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128973.3 → NP_180969.2  ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180969.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VQ16, A0A1P8B2K1
    Conserved Domains (2) summary
    pfam04780
    Location:228 → 682
    DUF629; Protein of unknown function (DUF629)
    pfam04781
    Location:56 → 172
    DUF627; Protein of unknown function (DUF627)

  2. NM_001336496.1 → NP_001318348.1  ubiquitin carboxyl-terminal hydrolase-like protein, putative (DUF627 and DUF629) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VQJ9, A0A5S9X3S4, A0A654F041, F4IGX4, O80771
Nucleotide Protein
Heading Accession and Version

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