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CIPK13 CBL-interacting protein kinase 13 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817979, updated on 18-Sep-2024

Summary

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Official Symbol
CIPK13
Official Full Name
CBL-interacting protein kinase 13
Primary source
TAIR:AT2G34180
Locus tag
AT2G34180
See related
Araport:AT2G34180
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATWL2; CBL-interacting protein kinase 13; F13P17.2; F13P17_2; SNF1-RELATED PROTEIN KINASE 3.7; SnRK3.7; WL2; WPL4-LIKE 2
Summary
Encodes CBL-interacting protein kinase 13 (CIPK13).
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Genomic context

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See CIPK13 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (14430761..14432482, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene SCAR family protein Neighboring gene Alba DNA/RNA-binding protein Neighboring gene hypothetical protein (DUF688) Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Xanthine/uracil permease family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Variable interactions between sucrose non-fermented 1-related protein kinases and regulatory proteins in higher plants. Nozawa A, et al. Biosci Biotechnol Biochem, 2003 Dec. PMID 14730130
  2. The NAF domain defines a novel protein-protein interaction module conserved in Ca2+-regulated kinases. Albrecht V, et al. EMBO J, 2001 Mar 1. PMID 11230129, Free PMC Article
  3. Comprehensive structural, interaction and expression analysis of CBL and CIPK complement during abiotic stresses and development in rice. Kanwar P, et al. Cell Calcium, 2014 Aug. PMID 24970010
  4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_128969.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
CBL-interacting protein kinase 13
NP_180965.1
  • CBL-interacting protein kinase 13 (CIPK13); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; EXPRESSED IN: root, pollen tube; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 18 (TAIR:AT1G29230.1); Has 130054 Blast hits to 127991 proteins in 4467 species: Archae - 168; Bacteria - 15242; Metazoa - 47793; Fungi - 12893; Plants - 31934; Viruses - 521; Other Eukaryotes - 21503 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14430761..14432482 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128969.2 → NP_180965.1  CBL-interacting protein kinase 13 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180965.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22971
    UniProtKB/TrEMBL
    A0A178VYP1, A0A5S9X3R1
    Conserved Domains (2) summary
    cd12195
    Location:372 → 479
    CIPK_C; C-terminal regulatory domain of Calcineurin B-Like (CBL)-interacting protein kinases
    cl21453
    Location:56 → 310
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O22971.2

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