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Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817933, updated on 18-Sep-2024

Summary

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Official Full Name
Tetratricopeptide repeat (TPR)-like superfamily protein
Primary source
TAIR:AT2G33680
Locus tag
AT2G33680
See related
Araport:AT2G33680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T1B8.1; T1B8_1
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (14248057..14251936)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene tRNA-Asp Neighboring gene tRNA-Asp Neighboring gene Seven transmembrane MLO family protein Neighboring gene uncharacterized protein Neighboring gene Late embryogenesis abundant protein, group 6 Neighboring gene Protein phosphatase 2C family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The pentatricopeptide repeat protein GEND1 is required for root development and high temperature tolerance in Arabidopsis thaliana. Guo Z, et al. Biochem Biophys Res Commun, 2021 Nov 12. PMID 34536829
  2. Tissue organization of fasciated lateral roots of Arabidopsis mutants suggestive of the robust nature of outer layer patterning. Otsuka K, et al. J Plant Res, 2012 Jul. PMID 22258701
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA modification IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lateral root morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to temperature stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tetratricopeptide repeat (TPR)-like superfamily protein
NP_001318343.1
  • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G13600.1); Has 49646 Blast hits to 13771 proteins in 238 species: Archae - 0; Bacteria - 6; Metazoa - 50; Fungi - 74; Plants - 48928; Viruses - 0; Other Eukaryotes - 588 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14248057..14251936
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336462.1 → NP_001323755.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VTD2, A0A1P8AY39, A0A384KS37, A0A654EYI9
    Conserved Domains (2) summary
    PLN03077
    Location:91 → 780
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:555 → 582
    PPR; PPR repeat [structural motif]

  2. NM_001336461.1 → NP_001318343.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P93005
    UniProtKB/TrEMBL
    A0A654EYI9
    Conserved Domains (2) summary
    PLN03077
    Location:27 → 716
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:491 → 518
    PPR; PPR repeat [structural motif]

  3. NM_001336463.1 → NP_001323754.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VTD2, A0A1P8AY39, A0A384KS37, A0A654EYI9
    Conserved Domains (2) summary
    PLN03077
    Location:91 → 780
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:555 → 582
    PPR; PPR repeat [structural motif]

  4. NM_001336464.1 → NP_001323759.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VTD2, A0A1P8AY39, A0A384KS37, A0A654EYI9
    Conserved Domains (2) summary
    PLN03077
    Location:91 → 780
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:555 → 582
    PPR; PPR repeat [structural motif]

  5. NM_001336465.1 → NP_001323758.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AY14, A0A5S9X3Q8, A0A654EYI9
    Conserved Domains (2) summary
    PLN03077
    Location:102 → 791
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:566 → 593
    PPR; PPR repeat [structural motif]

  6. NM_001336466.1 → NP_001323757.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AY27, A0A654EYI9

  7. NM_001336467.1 → NP_001323756.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P93005
    UniProtKB/TrEMBL
    A0A654EYI9
    Conserved Domains (2) summary
    PLN03077
    Location:27 → 716
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:491 → 518
    PPR; PPR repeat [structural motif]

  8. NM_128926.1 → NP_180924.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180924.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P93005
    UniProtKB/TrEMBL
    A0A654EYI9
    Conserved Domains (2) summary
    PLN03077
    Location:27 → 716
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:491 → 518
    PPR; PPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P93005.1

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