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CPL3 C-terminal domain phosphatase-like 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817919, updated on 18-Sep-2024

Summary

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Official Symbol
CPL3
Official Full Name
C-terminal domain phosphatase-like 3
Primary source
TAIR:AT2G33540
Locus tag
AT2G33540
See related
Araport:AT2G33540
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATCPL3; C-terminal domain phosphatase-like 3; F4P9.31; F4P9_31
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Genomic context

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See CPL3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Sequence:
Chromosome: 2; NC_003071.7 (14203401..14209192, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ATP-dependent RNA helicase Neighboring gene cysteine-rich/transmembrane domain protein A Neighboring gene serine carboxypeptidase-like 46 Neighboring gene Homeodomain-like superfamily protein Neighboring gene BUB1-related (BUB1: budding uninhibited by benzymidazol 1)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CPL2 and CPL3 act redundantly in FLC activation and flowering time regulation in Arabidopsis. Zhang Y, et al. Plant Signal Behav, 2022 Dec 31. PMID 35112651, Free PMC Article
  2. Arabidopsis CAPRICE-LIKE MYB 3 (CPL3) controls endoreduplication and flowering development in addition to trichome and root hair formation. Tominaga R, et al. Development, 2008 Apr. PMID 18305006
  3. A Molecular switch for FLOWERING LOCUS C activation determines flowering time in Arabidopsis. Shen L, et al. Plant Cell, 2022 Feb 3. PMID 34850922, Free PMC Article
  4. A genetics screen highlights emerging roles for CPL3, RST1 and URT1 in RNA metabolism and silencing. Li T, et al. Nat Plants, 2019 May. PMID 31076735
  5. Arabidopsis carboxyl-terminal domain phosphatase-like isoforms share common catalytic and interaction domains but have distinct in planta functions. Bang W, et al. Plant Physiol, 2006 Oct. PMID 16905668, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Arabidopsis CPL3 controls endoreduplication and flowering development in addition to trichrome and root hair formation.
    Title: Arabidopsis CAPRICE-LIKE MYB 3 (CPL3) controls endoreduplication and flowering development in addition to trichome and root hair formation.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001336459.1
NM_128914.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA polymerase II CTD heptapeptide repeat phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables myosin phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of abscisic acid-activated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within negative regulation of post-transcriptional gene silencing by regulatory ncRNA IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within protein dephosphorylation IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within regulation of photoperiodism, flowering IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in response to salt stress IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
C-terminal domain phosphatase-like 3
NP_180912.2
  • C-terminal domain phosphatase-like 3 (CPL3); FUNCTIONS IN: phosphoprotein phosphatase activity, CTD phosphatase activity; INVOLVED IN: response to salt stress; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: FCP1-like phosphatase, phosphatase domain (InterPro:IPR011947), NLI interacting factor (InterPro:IPR004274), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: C-terminal domain phosphatase-like 4 (TAIR:AT5G58003.1); Has 1686 Blast hits to 1267 proteins in 263 species: Archae - 0; Bacteria - 131; Metazoa - 483; Fungi - 269; Plants - 334; Viruses - 2; Other Eukaryotes - 467 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14203401..14209192 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128914.3 → NP_180912.2  C-terminal domain phosphatase-like 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180912.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O22804, Q8LL04
    UniProtKB/TrEMBL
    A0A178VZF2
    Conserved Domains (2) summary
    TIGR02250
    Location:922 → 1086
    FCP1_euk; FCP1-like phosphatase, phosphatase domain
    smart00292
    Location:1148 → 1225
    BRCT; breast cancer carboxy-terminal domain

  2. NM_001336459.1 → NP_001325202.1  C-terminal domain phosphatase-like 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B2G0, A0A7G2EGZ3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LL04.2

Gene LinkOut

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