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Transcription elongation factor (TFIIS) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817893, updated on 18-Sep-2024

Summary

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Official Full Name
Transcription elongation factor (TFIIS) family protein
Primary source
TAIR:AT2G33300
Locus tag
AT2G33300
See related
Araport:AT2G33300
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F4P9.7; F4P9_7
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (14113025..14114200)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Major facilitator superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene SU(VAR)3-9 homolog 2 Neighboring gene auxin-induced protein 13 Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene plasmodesmata-located protein 3 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_128890.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Transcription elongation factor (TFIIS) family protein
NP_180888.2
  • Transcription elongation factor (TFIIS) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT2G33090.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14113025..14114200
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128890.2 → NP_180888.2  Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180888.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W0H2, A0A5S9X3S8, Q1PEX4
    Conserved Domains (1) summary
    smart00509
    Location:185 → 264
    TFS2N; Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)
Nucleotide Protein
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