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Transcription elongation factor (TFIIS) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817871, updated on 18-Sep-2024

Summary

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Official Full Name
Transcription elongation factor (TFIIS) family protein
Primary source
TAIR:AT2G33090
Locus tag
AT2G33090
See related
Araport:AT2G33090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F25I18.17; F25I18_17
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (14035215..14035961, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene nitrile specifier protein 2 Neighboring gene receptor like protein 28 Neighboring gene cellulose synthase-like D1 Neighboring gene vesicle-associated membrane protein 723

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_128869.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Transcription elongation factor (TFIIS) family protein
NP_180868.1
  • Transcription elongation factor (TFIIS) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT2G33300.1); Has 73 Blast hits to 73 proteins in 14 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14035215..14035961 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128869.1 → NP_180868.1  Transcription elongation factor (TFIIS) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180868.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0MER5, O49324
    Conserved Domains (1) summary
    smart00509
    Location:157 → 237
    TFS2N; Domain in the N-terminus of transcription elongation factor S-II (and elsewhere)
Nucleotide Protein
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