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BGAL9 beta galactosidase 9 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817842, updated on 18-Sep-2024

Summary

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Official Symbol
BGAL9
Official Full Name
beta galactosidase 9
Primary source
TAIR:AT2G32810
Locus tag
AT2G32810
See related
Araport:AT2G32810
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
beta galactosidase 9; beta-galactosidase 9; F24L7.5; F24L7_5
Summary
putative beta-galactosidase
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Genomic context

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See BGAL9 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
19
Sequence:
Chromosome: 2; NC_003071.7 (13919127..13925421, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein kinase family protein Neighboring gene Transcription elongation factor (TFIIS) family protein Neighboring gene phosphate transporter 1;5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. Shimaoka T, et al. Plant Cell Physiol, 2004 Jun. PMID 15215502
  2. Profiling of the Receptor for Activated C Kinase 1a (RACK1a) interaction network in Arabidopsis thaliana. Guo J, et al. Biochem Biophys Res Commun, 2019 Dec 3. PMID 31606202
  3. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
  4. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
  5. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001202731.1
NM_128841.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables beta-galactosidase activity IEA
Inferred from Electronic Annotation
more info
  
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plant-type vacuole HDA PubMed 
located_in vacuole HDA PubMed 

General protein information

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Preferred Names
beta galactosidase 9
NP_001189660.1
  • beta galactosidase 9 (BGAL9); FUNCTIONS IN: cation binding, sugar binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 8 (TAIR:AT2G28470.1).
NP_565755.1
  • beta galactosidase 9 (BGAL9); FUNCTIONS IN: sugar binding, cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 8 (TAIR:AT2G28470.1); Has 2947 Blast hits to 2593 proteins in 491 species: Archae - 15; Bacteria - 1028; Metazoa - 963; Fungi - 209; Plants - 636; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    13919127..13925421 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128841.5 → NP_565755.1  beta galactosidase 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565755.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O48836, Q9SCV3
    UniProtKB/TrEMBL
    A0A178VQG0, A0A5S9X3F0
    Conserved Domains (4) summary
    PLN03059
    Location:37 → 877
    PLN03059; beta-galactosidase; Provisional
    pfam01301
    Location:44 → 348
    Glyco_hydro_35; Glycosyl hydrolases family 35
    pfam02140
    Location:799 → 876
    Gal_Lectin; Galactose binding lectin domain
    pfam13364
    Location:640 → 689
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain

  2. NM_001202731.1 → NP_001189660.1  beta galactosidase 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189660.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VQG0, A0A5S9X3F0, F4IUQ7
    Conserved Domains (4) summary
    PLN03059
    Location:37 → 835
    PLN03059; beta-galactosidase; Provisional
    pfam01301
    Location:44 → 348
    Glyco_hydro_35; Glycosyl hydrolases family 35
    pfam02140
    Location:799 → 847
    Gal_Lectin; Galactose binding lectin domain
    pfam13364
    Location:640 → 689
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SCV3.1

Gene LinkOut

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