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FAM136A-like protein (DUF842) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817729, updated on 18-Sep-2024

Summary

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Official Full Name
FAM136A-like protein (DUF842)
Primary source
TAIR:AT2G31725
Locus tag
AT2G31725
See related
Araport:AT2G31725
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T9H9.25; T9H9_25
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (13486237..13487507, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Vacuolar ATPase assembly integral membrane protein VMA21-like domain-containing protein Neighboring gene B3 domain protein (DUF313) Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_128730.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in peroxisome HDA PubMed 

General protein information

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Preferred Names
FAM136A-like protein (DUF842)
NP_565729.1
  • Eukaryotic protein of unknown function (DUF842); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF842, eukaryotic (InterPro:IPR008560); BEST Arabidopsis thaliana protein match is: Eukaryotic protein of unknown function (DUF842) (TAIR:AT1G05730.1); Has 259 Blast hits to 259 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    13486237..13487507 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128730.3 → NP_565729.1  FAM136A-like protein (DUF842) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565729.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VXQ0, Q8RV68
    Conserved Domains (1) summary
    pfam05811
    Location:19 → 139
    DUF842; Eukaryotic protein of unknown function (DUF842)
Nucleotide Protein
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