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Vacuolar ATPase assembly integral membrane protein VMA21-like domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817727, updated on 18-Sep-2024

Summary

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Official Full Name
Vacuolar ATPase assembly integral membrane protein VMA21-like domain-containing protein
Primary source
TAIR:AT2G31710
Locus tag
AT2G31710
See related
Araport:AT2G31710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T9H9.23; T9H9_23
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (13481758..13483193, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene uncharacterized protein Neighboring gene B3 domain protein (DUF313) Neighboring gene FAM136A-like protein (DUF842)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular characterization of the cold- and heat-induced Arabidopsis PXL1 gene and its potential role in transduction pathways under temperature fluctuations. Jung CG, et al. J Plant Physiol, 2015 Mar 15. PMID 25602612
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_128728.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Vacuolar ATPase assembly integral membrane protein VMA21-like domain-containing protein
NP_565728.1
  • Vacuolar ATPase assembly integral membrane protein VMA21-like domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (InterPro:IPR019013); BEST Arabidopsis thaliana protein match is: Vacuolar ATPase assembly integral membrane protein VMA21-like domain (TAIR:AT1G05780.1); Has 35 Blast hits to 35 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    13481758..13483193 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128728.4 → NP_565728.1  Vacuolar ATPase assembly integral membrane protein VMA21-like domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565728.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VT97, Q9SIN7
    Conserved Domains (1) summary
    pfam09446
    Location:3 → 65
    VMA21; VMA21-like domain
Nucleotide Protein
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