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ARPC1B actin-related protein C1B [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817687, updated on 18-Sep-2024

Summary

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Official Symbol
ARPC1B
Official Full Name
actin-related protein C1B
Primary source
TAIR:AT2G31300
Locus tag
AT2G31300
See related
Araport:AT2G31300
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ACTIN-RELATED PROTEIN C1; actin-related protein C1B; ARPC1; F16D14.14; F16D14_14
Summary
putative ARP2/3 protein complex subunit p41
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Genomic context

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See ARPC1B in Genome Data Viewer
Location:
chromosome: 2
Exon count:
16
Sequence:
Chromosome: 2; NC_003071.7 (13345977..13350004, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene CDT1-like protein A Neighboring gene transcription factor bHLH155-like protein Neighboring gene Ubiquitin carboxyl-terminal hydrolase family protein Neighboring gene ncRNA Neighboring gene inhibitor-3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Breaking the WAVE complex: the point of Arabidopsis trichomes. Szymanski DB. Curr Opin Plant Biol, 2005 Feb. PMID 15653407
  2. The actin cytoskeleton is required to elaborate and maintain spatial patterning during trichome cell morphogenesis in Arabidopsis thaliana. Mathur J, et al. Development, 1999 Dec. PMID 10572033
  3. Molecular dissection of plant cytokinesis and phragmoplast structure: a survey of GFP-tagged proteins. Van Damme D, et al. Plant J, 2004 Nov. PMID 15469496
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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NM_128686.3

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in Arp2/3 complex-mediated actin nucleation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within actin filament organization TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of Arp2/3 protein complex TAS
Traceable Author Statement
more info
 PubMed 
located_in cytoplasm HDA PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleus HDA PubMed 

General protein information

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Preferred Names
actin-related protein C1B
NP_180688.1
  • actin-related protein C1B (ARPC1B); FUNCTIONS IN: actin binding, nucleotide binding; INVOLVED IN: actin filament organization; LOCATED IN: Arp2/3 protein complex, nucleus, cytoplasm; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Actin-related protein 2/3 complex, subunit 1 (InterPro:IPR017383), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: actin-related protein C1A (TAIR:AT2G30910.3); Has 4117 Blast hits to 2979 proteins in 306 species: Archae - 4; Bacteria - 869; Metazoa - 1495; Fungi - 819; Plants - 455; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    13345977..13350004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336326.1 → NP_001323442.1  actin-related protein C1B [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AX56, A0A5S9X2V2

  2. NM_128686.3 → NP_180688.1  actin-related protein C1B [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180688.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SJW6
    UniProtKB/TrEMBL
    A0A5S9X2V2
    Conserved Domains (3) summary
    COG2319
    Location:14 → 174
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:13 → 53
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:48 → 369
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SJW6.1

Gene LinkOut

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