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Ubiquitin carboxyl-terminal hydrolase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817686, updated on 18-Sep-2024

Summary

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Official Full Name
Ubiquitin carboxyl-terminal hydrolase family protein
Primary source
TAIR:AT2G31290
Locus tag
AT2G31290
See related
Araport:AT2G31290
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F16D14.13; F16D14_13
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (13343724..13346332)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene CDT1-like protein A Neighboring gene transcription factor bHLH155-like protein Neighboring gene actin-related protein C1B Neighboring gene ncRNA Neighboring gene inhibitor-3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001036378.3
NM_128685.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ubiquitin carboxyl-terminal hydrolase family protein
NP_001031455.1
  • Ubiquitin carboxyl-terminal hydrolase family protein; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT3G63090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_180687.1
  • Ubiquitin carboxyl-terminal hydrolase family protein; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT3G63090.1); Has 410 Blast hits to 406 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 408; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    13343724..13346332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001036378.3 → NP_001031455.1  Ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031455.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9X342, A0A7G2EAF1, Q570M8, Q9SJW7
    Conserved Domains (1) summary
    pfam11955
    Location:29 → 345
    PORR; Plant organelle RNA recognition domain

  2. NM_128685.3 → NP_180687.1  Ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180687.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9X342, A0A7G2EAF1, Q570M8, Q9SJW7
    Conserved Domains (1) summary
    pfam11955
    Location:29 → 345
    PORR; Plant organelle RNA recognition domain
Nucleotide Protein
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